Variant report

Variant	rs35920302
Chromosome Location	chr4:7883387-7883388
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:7881697..7884478-chr4:7901263..7903029,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs28367252	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35631048	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv34140	chr4:7787936-8172491	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	esv2754386	chr4:7822449-7992909	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2756298	chr4:7822449-7992909	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv878578	chr4:7841833-7969594	Enhancers Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7857800-7896400	Weak transcription	Spleen	Spleen
2	chr4:7866000-7885600	Weak transcription	Esophagus	oesophagus
3	chr4:7873600-7894000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr4:7874600-7887600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:7874600-7892800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr4:7874600-7894000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr4:7876000-7891800	Weak transcription	Hela-S3	cervix
8	chr4:7876800-7885400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr4:7877400-7885000	Enhancers	NH-A	brain
10	chr4:7877800-7883400	Enhancers	Fetal Muscle Leg	muscle
11	chr4:7878200-7898400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr4:7878400-7886600	Weak transcription	Small Intestine	intestine
13	chr4:7879000-7888200	Weak transcription	Fetal Intestine Large	intestine
14	chr4:7879400-7883600	Weak transcription	HMEC	breast
15	chr4:7879400-7888000	Weak transcription	Fetal Brain Female	brain
16	chr4:7879400-7891800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr4:7879800-7886800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr4:7880200-7884800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr4:7880400-7888000	Weak transcription	Brain Anterior Caudate	brain
20	chr4:7880600-7883600	Enhancers	Fetal Muscle Trunk	muscle
21	chr4:7880800-7883400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr4:7881000-7887200	Weak transcription	Brain Germinal Matrix	brain
23	chr4:7881200-7885800	Enhancers	Osteobl	bone
24	chr4:7881200-7887000	Weak transcription	Aorta	Aorta
25	chr4:7881200-7887200	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr4:7881200-7888200	Weak transcription	Psoas Muscle	Psoas
27	chr4:7881200-7888400	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr4:7881400-7884200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr4:7881400-7886600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr4:7881400-7887000	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr4:7881800-7884000	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr4:7881800-7889800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr4:7881800-7896600	Weak transcription	Lung	lung
34	chr4:7882400-7885400	Enhancers	A549	lung
35	chr4:7882400-7885800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr4:7882600-7883600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr4:7882600-7883600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr4:7882600-7883600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr4:7882600-7885200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr4:7882600-7886400	Weak transcription	HepG2	liver
41	chr4:7882600-7887000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr4:7882600-7888200	Weak transcription	Stomach Mucosa	stomach
43	chr4:7882600-7888400	Weak transcription	Fetal Brain Male	brain
44	chr4:7882800-7884400	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr4:7882800-7884600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr4:7882800-7885600	Weak transcription	Fetal Intestine Small	intestine
47	chr4:7882800-7887200	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr4:7882800-7888000	Weak transcription	NHDF-Ad	bronchial
49	chr4:7883000-7883400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr4:7883000-7887000	Weak transcription	HSMMtube	muscle

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