Variant report

Variant	rs35925709
Chromosome Location	chr10:50344283-50344284
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr10:50344069-50344288	H1-hESC	embryonic stem cell:	n/a	chr10:50344244-50344253
2	FOXA2	chr10:50344091-50344396	A549	lung:	n/a	n/a
3	KAP1	chr10:50343583-50344907	U2OS	brain:	n/a	n/a
4	FOXA1	chr10:50344149-50344492	HepG2	liver:	n/a	n/a
5	KAP1	chr10:50343835-50344917	HEK293	kidney:	n/a	n/a
6	FOXA1	chr10:50344176-50344360	T-47D	breast:	n/a	n/a
7	FOXA2	chr10:50344129-50344331	HepG2	liver:	n/a	n/a
8	FOXA2	chr10:50344076-50344470	A549	lung:	n/a	n/a
9	JUND	chr10:50344066-50344383	K562	blood:	n/a	chr10:50344244-50344253
10	ATF2	chr10:50344041-50344420	GM12878	blood:	n/a	n/a
11	SETDB1	chr10:50343862-50345048	U2OS	brain:	n/a	n/a
12	CTCF	chr10:50344140-50344290	HBMEC	blood vessel:	n/a	n/a
13	FOXA1	chr10:50344145-50344359	HepG2	liver:	n/a	n/a
14	JUND	chr10:50344147-50344392	HepG2	liver:	n/a	chr10:50344244-50344253

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50322283..50325786-chr10:50341748..50344745,3	K562	blood:
2	chr10:50343053..50345152-chr10:50372726..50375346,2	K562	blood:

Variant related genes	Relation type
FAM170B	TF binding region
FAM170B-AS1	TF binding region
ENSG00000165633	Chromatin interaction
ENSG00000204161	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12411992	1.00[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs57040525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60527365	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50340400-50347600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:50342200-50344600	Enhancers	Primary B cells from cord blood	blood
3	chr10:50342200-50346200	Weak transcription	Left Ventricle	heart
4	chr10:50342200-50347000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:50342200-50349800	Enhancers	Fetal Lung	lung
6	chr10:50342400-50344400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr10:50342400-50345400	Enhancers	Primary B cells from peripheral blood	blood
8	chr10:50342600-50344800	Enhancers	Adipose Nuclei	Adipose
9	chr10:50343000-50357800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr10:50343600-50344400	Enhancers	Aorta	Aorta
11	chr10:50343600-50344600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:50343800-50345800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr10:50343800-50346800	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr10:50344000-50344400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:50344000-50346400	Weak transcription	Ovary	ovary
16	chr10:50344000-50347600	Weak transcription	Right Ventricle	heart
17	chr10:50344200-50344600	Weak transcription	Fetal Muscle Leg	muscle
18	chr10:50344200-50345800	Weak transcription	Fetal Stomach	stomach
19	chr10:50344200-50346200	Weak transcription	NH-A	brain
20	chr10:50344200-50346200	Weak transcription	Osteobl	bone
21	chr10:50344200-50346600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr10:50344200-50346800	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr10:50344200-50346800	Weak transcription	Right Atrium	heart
24	chr10:50344200-50347600	Weak transcription	Esophagus	oesophagus
25	chr10:50344200-50352200	Weak transcription	Fetal Thymus	thymus

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