Variant report

Variant	rs35926612
Chromosome Location	chr4:159074426-159074427
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs71607169	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993476	chr4:158550643-159202015	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1030124	chr4:158758675-159251140	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1021067	chr4:158972282-159175475	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv967692	chr4:159068843-159076875	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:159042800-159083600	Weak transcription	Fetal Muscle Leg	muscle
2	chr4:159047000-159080200	Weak transcription	Right Ventricle	heart
3	chr4:159051800-159080400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr4:159052600-159080200	Weak transcription	Left Ventricle	heart
5	chr4:159055600-159076200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:159059000-159077800	Weak transcription	Aorta	Aorta
7	chr4:159059400-159076600	Weak transcription	Colon Smooth Muscle	Colon
8	chr4:159060600-159076600	Weak transcription	HMEC	breast
9	chr4:159062000-159077600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr4:159062600-159077800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr4:159062600-159083600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr4:159063400-159078800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr4:159066200-159076600	Weak transcription	Small Intestine	intestine
14	chr4:159066200-159076800	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr4:159066400-159080400	Weak transcription	Brain Hippocampus Middle	brain
16	chr4:159067400-159077200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:159068400-159078200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr4:159068600-159080400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr4:159068600-159080400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr4:159068600-159082000	Weak transcription	Brain Substantia Nigra	brain
21	chr4:159068800-159076200	Weak transcription	Fetal Muscle Trunk	muscle
22	chr4:159068800-159079400	Weak transcription	Brain Angular Gyrus	brain
23	chr4:159068800-159081000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr4:159069400-159077000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr4:159070600-159079800	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr4:159071400-159080400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr4:159072000-159080000	Weak transcription	Stomach Smooth Muscle	stomach
28	chr4:159072000-159083800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr4:159072200-159076600	Weak transcription	HSMMtube	muscle
30	chr4:159072400-159077200	Weak transcription	Fetal Heart	heart
31	chr4:159072600-159076400	Weak transcription	HUVEC	blood vessel
32	chr4:159072800-159076400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr4:159073200-159076000	Weak transcription	Adipose Nuclei	Adipose
34	chr4:159073400-159075400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr4:159073400-159076000	Weak transcription	HepG2	liver
36	chr4:159073400-159076200	Weak transcription	HSMM	muscle
37	chr4:159073400-159076400	Weak transcription	Fetal Intestine Small	intestine
38	chr4:159073400-159076600	Weak transcription	Fetal Intestine Large	intestine
39	chr4:159073400-159077200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr4:159073400-159077800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr4:159073400-159080000	Weak transcription	Fetal Stomach	stomach
42	chr4:159073400-159082600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr4:159073400-159083000	Weak transcription	Pancreas	Pancrea
44	chr4:159073600-159076800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr4:159073800-159074600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr4:159074000-159075800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr4:159074200-159075200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr4:159074400-159077000	Strong transcription	Ovary	ovary

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