Variant report

Variant	rs35927754
Chromosome Location	chr4:141135697-141135698
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10841653	0.86[EUR][1000 genomes]
rs12315262	0.86[EUR][1000 genomes]
rs12811566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12821625	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12822412	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12822418	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28855787	0.82[EUR][1000 genomes]
rs34150947	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34484512	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35297585	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35607111	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36076858	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58227070	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67516591	0.87[EUR][1000 genomes]
rs7305269	0.86[EUR][1000 genomes]
rs892288	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024420	chr4:140981754-141237556	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv537287	chr4:140981754-141237556	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1026652	chr4:141132296-141217755	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141132200-141135800	Enhancers	Fetal Intestine Large	intestine
2	chr4:141132600-141135800	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr4:141132800-141135800	Enhancers	Fetal Intestine Small	intestine
4	chr4:141134400-141140400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr4:141134600-141137000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr4:141134800-141135800	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr4:141134800-141140200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:141134800-141140200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr4:141135000-141135800	Enhancers	Colonic Mucosa	Colon
10	chr4:141135000-141137200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr4:141135200-141140200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr4:141135200-141140400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr4:141135200-141140400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:141135200-141143400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr4:141135400-141136200	Weak transcription	Duodenum Mucosa	Duodenum
16	chr4:141135400-141140800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr4:141135600-141136200	Weak transcription	Rectal Mucosa Donor 29	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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