Variant report

Variant	rs35929301
Chromosome Location	chr12:63440122-63440123
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12814605	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12815621	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17098789	0.85[EUR][1000 genomes]
rs17098794	0.85[EUR][1000 genomes]
rs17098802	1.00[ASN][1000 genomes]
rs17739095	0.85[EUR][1000 genomes]
rs960592	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415227	chr12:63228121-63591615	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1046836	chr12:63392391-64377169	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63438400-63440200	Enhancers	Muscle Satellite Cultured Cells	--
2	chr12:63438400-63440400	Enhancers	NH-A	brain
3	chr12:63438600-63440200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr12:63438800-63440200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr12:63439000-63441200	Weak transcription	Aorta	Aorta
6	chr12:63439600-63440200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr12:63439600-63440200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr12:63439600-63440200	Enhancers	Placenta	Placenta
9	chr12:63439600-63440400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr12:63440000-63440200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr12:63440000-63440200	Enhancers	NHDF-Ad	bronchial
12	chr12:63440000-63441400	Enhancers	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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