Variant report

Variant	rs35929595
Chromosome Location	chr5:56989824-56989825
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:56978767..56981076-chr5:56987149..56990064,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12516773	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35327962	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2756302	chr5:56978143-57180143	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830310	chr5:56989346-57176006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:56985600-56990400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:56986800-56991800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:56987000-56992800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:56987400-56994800	Weak transcription	Right Ventricle	heart
5	chr5:56987600-56991400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:56987600-56991800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr5:56988200-56990000	Enhancers	Brain Cingulate Gyrus	brain
8	chr5:56988200-56993400	Enhancers	Brain Angular Gyrus	brain
9	chr5:56988400-56990000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:56988400-56990000	Enhancers	Fetal Intestine Small	intestine
11	chr5:56988400-56990000	Enhancers	Hela-S3	cervix
12	chr5:56988400-56990000	Enhancers	HUVEC	blood vessel
13	chr5:56988400-56990200	Flanking Active TSS	A549	lung
14	chr5:56988400-56990200	Enhancers	NH-A	brain
15	chr5:56988400-56990600	Enhancers	HepG2	liver
16	chr5:56988400-56991600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr5:56988400-56991800	Enhancers	Fetal Lung	lung
18	chr5:56988600-56995400	Enhancers	Adipose Nuclei	Adipose
19	chr5:56989000-56990200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr5:56989000-56990200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr5:56989000-56992000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr5:56989200-56990000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr5:56989200-56990000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr5:56989200-56990200	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr5:56989200-56990600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr5:56989200-56990600	Weak transcription	Left Ventricle	heart
27	chr5:56989200-56990600	Weak transcription	Pancreas	Pancrea
28	chr5:56989200-56990600	Weak transcription	Right Atrium	heart
29	chr5:56989200-56991000	Enhancers	Brain Hippocampus Middle	brain
30	chr5:56989200-56991000	Weak transcription	Colon Smooth Muscle	Colon
31	chr5:56989200-56991200	Weak transcription	Esophagus	oesophagus
32	chr5:56989200-56991200	Weak transcription	Fetal Muscle Leg	muscle
33	chr5:56989200-56991600	Weak transcription	Stomach Smooth Muscle	stomach
34	chr5:56989400-56990000	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr5:56989400-56990000	Flanking Active TSS	Liver	Liver
36	chr5:56989400-56990200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr5:56989400-56990400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr5:56989400-56991200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr5:56989400-56996000	Enhancers	Fetal Heart	heart
40	chr5:56989600-56990200	Active TSS	HMEC	breast
41	chr5:56989600-56990200	Active TSS	NHEK	skin
42	chr5:56989600-56990600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr5:56989600-56990600	Weak transcription	Fetal Intestine Large	intestine
44	chr5:56989600-56990600	Weak transcription	Ovary	ovary
45	chr5:56989600-56991000	Weak transcription	Stomach Mucosa	stomach
46	chr5:56989600-56991200	Weak transcription	Aorta	Aorta
47	chr5:56989600-56991800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr5:56989600-56992200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr5:56989600-56992200	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr5:56989600-56992600	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links