Variant report

Variant	rs35931188
Chromosome Location	chr8:105702502-105702503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:105702361..105702888-chr8:105771733..105772593,2	MCF-7	breast:
2	chr8:105698626..105703795-chr8:105706675..105713568,6	K562	blood:
3	chr8:105700606..105702982-chr8:105716368..105719879,3	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11775279	1.00[ASN][1000 genomes]
rs11780991	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13250799	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13251577	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13253231	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13263407	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13263691	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13263724	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13281201	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1370798	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1438341	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17263776	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2028243	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2341866	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34027648	0.81[EUR][1000 genomes]
rs34080218	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34989786	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35641998	1.00[ASN][1000 genomes]
rs35699791	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36069650	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36072167	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4545061	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4613969	1.00[ASN][1000 genomes]
rs4734110	1.00[ASN][1000 genomes]
rs4734805	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734806	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734814	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734816	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57857375	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72674139	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7465486	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	esv2422460	chr8:105573376-105746329	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1032476	chr8:105609904-106030916	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv539710	chr8:105609904-106030916	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105699200-105703600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:105699400-105703600	Weak transcription	HMEC	breast
3	chr8:105701600-105702600	Enhancers	HUVEC	blood vessel
4	chr8:105701600-105703600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr8:105701800-105703600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr8:105701800-105705000	Enhancers	K562	blood
7	chr8:105702000-105704200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr8:105702200-105703800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr8:105702400-105703200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr8:105702400-105703800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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