Variant report

Variant	rs35931221
Chromosome Location	chr2:183409319-183409320
allele	AT/GG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2368301	0.80[EUR][1000 genomes]
rs34053285	1.00[ASN][1000 genomes]
rs61748252	1.00[ASN][1000 genomes]
rs61748253	1.00[ASN][1000 genomes]
rs6747822	1.00[ASN][1000 genomes]
rs73046489	1.00[ASN][1000 genomes]
rs934263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	esv2830429	chr2:183300759-183545378	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183404200-183411800	Weak transcription	Fetal Brain Male	brain
2	chr2:183407400-183413800	Enhancers	HUVEC	blood vessel
3	chr2:183407800-183412800	Weak transcription	Fetal Lung	lung
4	chr2:183407800-183413200	Weak transcription	NHLF	lung
5	chr2:183408000-183412400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:183408000-183412800	Weak transcription	Osteobl	bone
7	chr2:183408200-183409400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr2:183408200-183409800	Weak transcription	HSMMtube	muscle
9	chr2:183408400-183409400	Weak transcription	HSMM	muscle
10	chr2:183408400-183411200	Enhancers	Colon Smooth Muscle	Colon
11	chr2:183408400-183412800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:183408600-183409600	Enhancers	Ovary	ovary
13	chr2:183408600-183410800	Enhancers	Rectal Smooth Muscle	rectum
14	chr2:183408800-183409800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr2:183408800-183410400	Enhancers	Fetal Stomach	stomach
16	chr2:183409200-183411000	Enhancers	GM12878-XiMat	blood
17	chr2:183409200-183413000	Weak transcription	Duodenum Smooth Muscle	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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