Variant report

Variant	rs35932735
Chromosome Location	chr17:16874068-16874069
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11078360	0.84[EUR][1000 genomes]
rs11078361	0.84[EUR][1000 genomes]
rs11650505	0.80[EUR][1000 genomes]
rs11657227	0.97[EUR][1000 genomes]
rs11657263	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12051726	0.84[EUR][1000 genomes]
rs12051889	0.84[EUR][1000 genomes]
rs12051890	0.80[EUR][1000 genomes]
rs12051892	0.84[EUR][1000 genomes]
rs12051899	0.82[EUR][1000 genomes]
rs12051900	0.84[EUR][1000 genomes]
rs12150243	0.83[EUR][1000 genomes]
rs34663166	0.88[EUR][1000 genomes]
rs34722014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34870066	0.84[EUR][1000 genomes]
rs35678976	0.84[EUR][1000 genomes]
rs66479858	0.84[EUR][1000 genomes]
rs66847673	0.84[EUR][1000 genomes]
rs67001256	0.84[EUR][1000 genomes]
rs8082017	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058448	chr17:16389870-16926287	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1058863	chr17:16812121-16943780	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv543227	chr17:16812121-16943780	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv907726	chr17:16821204-16875636	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2761948	chr17:16868561-16920568	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16867400-16883800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr17:16870200-16875600	Active TSS	GM12878-XiMat	blood
3	chr17:16872600-16875800	Flanking Active TSS	Primary B cells from peripheral blood	blood
4	chr17:16873000-16874200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr17:16873000-16880800	Enhancers	Fetal Thymus	thymus
6	chr17:16873200-16874200	Flanking Active TSS	Dnd41	blood
7	chr17:16873200-16875600	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
8	chr17:16873400-16874400	Flanking Active TSS	Primary B cells from cord blood	blood
9	chr17:16873400-16874400	Active TSS	Spleen	Spleen
10	chr17:16873400-16875600	Enhancers	Thymus	Thymus
11	chr17:16873800-16874200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr17:16874000-16874200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr17:16874000-16874800	Weak transcription	Rectal Mucosa Donor 29	rectum

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