Variant report

Variant	rs35932840
Chromosome Location	chr10:97318185-97318186
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97290965..97293136-chr10:97317143..97318856,2	K562	blood:
2	chr10:97309672..97311515-chr10:97317695..97319479,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1075529	0.85[ASN][1000 genomes]
rs12252701	0.84[ASN][1000 genomes]
rs35302565	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv552022	chr10:97308114-97328227	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97305200-97318600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr10:97305200-97319000	Weak transcription	HSMM	muscle
3	chr10:97308000-97318600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:97310400-97318400	Weak transcription	Fetal Kidney	kidney
5	chr10:97311000-97318600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:97311400-97318400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:97313000-97318600	Weak transcription	Stomach Mucosa	stomach
8	chr10:97313400-97318200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr10:97313800-97318400	Weak transcription	Placenta	Placenta
10	chr10:97314800-97318200	Enhancers	Left Ventricle	heart
11	chr10:97315200-97321600	Active TSS	Aorta	Aorta
12	chr10:97315600-97319200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr10:97316000-97318200	Weak transcription	Brain Hippocampus Middle	brain
14	chr10:97316600-97318400	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr10:97316600-97318400	Enhancers	Fetal Heart	heart
16	chr10:97316800-97318200	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr10:97316800-97318400	Enhancers	Fetal Brain Male	brain
18	chr10:97316800-97318400	Transcr. at gene 5' and 3'	Stomach Smooth Muscle	stomach
19	chr10:97316800-97318400	Enhancers	HepG2	liver
20	chr10:97316800-97318600	Enhancers	Brain Germinal Matrix	brain
21	chr10:97316800-97318800	Enhancers	H1 Cell Line	embryonic stem cell
22	chr10:97316800-97319000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr10:97316800-97319200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr10:97316800-97319200	Enhancers	Gastric	stomach
25	chr10:97316800-97321600	Active TSS	Duodenum Smooth Muscle	Duodenum
26	chr10:97317000-97318200	Weak transcription	Fetal Intestine Large	intestine
27	chr10:97317000-97318600	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr10:97317000-97318600	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr10:97317000-97318600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr10:97317000-97319000	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr10:97317000-97319200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr10:97317000-97321600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
33	chr10:97317200-97318400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:97317200-97318400	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr10:97317200-97318400	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr10:97317200-97319400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr10:97317200-97321600	Active TSS	Right Ventricle	heart
38	chr10:97317400-97318200	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr10:97317400-97318400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr10:97317400-97318400	Weak transcription	Brain Cingulate Gyrus	brain
41	chr10:97317400-97318400	Weak transcription	Psoas Muscle	Psoas
42	chr10:97317400-97318400	Weak transcription	K562	blood
43	chr10:97317400-97318800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
44	chr10:97317400-97319000	Enhancers	Fetal Muscle Leg	muscle
45	chr10:97317400-97319200	Weak transcription	Ovary	ovary
46	chr10:97317600-97319200	Active TSS	Brain Inferior Temporal Lobe	brain
47	chr10:97317600-97319400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr10:97317600-97320400	Active TSS	Fetal Stomach	stomach
49	chr10:97317800-97318200	Weak transcription	Fetal Intestine Small	intestine
50	chr10:97317800-97318400	Enhancers	HUES6 Cell Line	embryonic stem cell

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