Variant report

Variant	rs35936271
Chromosome Location	chr16:69744243-69744244
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr16:69744236-69744625	HCT-116	colon:	n/a	n/a
2	POLR2A	chr16:69744207-69747991	A549	lung:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:69741680..69751385-chr16:69755023..69763559,18	MCF-7	breast:
2	chr16:69741307..69747044-chr16:69787229..69790189,11	MCF-7	breast:
3	chr16:69739403..69742355-chr16:69743812..69745961,3	MCF-7	breast:
4	chr16:69743672..69747154-chr16:69795617..69797836,3	MCF-7	breast:
5	chr16:69742300..69746801-chr16:69786779..69790470,7	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NFAT5-1	chr16:69744140-69744486	ENSG00000261602.1

No data

Variant related genes	Relation type
ENSG00000238683	TF binding region
ENSG00000262136	Chromatin interaction
ENSG00000181019	Chromatin interaction
ENSG00000198373	Chromatin interaction
ENSG00000141101	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10500553	0.81[AFR][1000 genomes]
rs16959043	0.80[AFR][1000 genomes]
rs16959109	0.87[AFR][1000 genomes]
rs16959116	0.87[AFR][1000 genomes]
rs34906225	0.87[AFR][1000 genomes]
rs45538135	0.93[AFR][1000 genomes]
rs7185079	0.81[AFR][1000 genomes]
rs8053774	0.87[AFR][1000 genomes]
rs8053982	0.80[AFR][1000 genomes]
rs9746351	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906822	chr16:69711533-69745145	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv906823	chr16:69711533-69959223	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	esv3396845	chr16:69721905-69770627	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69709400-69755400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr16:69726000-69755800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr16:69726600-69759800	Weak transcription	Psoas Muscle	Psoas
4	chr16:69726800-69747600	Weak transcription	Fetal Heart	heart
5	chr16:69728200-69746200	Weak transcription	Stomach Mucosa	stomach
6	chr16:69728200-69758600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr16:69728400-69748800	Weak transcription	Gastric	stomach
8	chr16:69728400-69759200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr16:69728600-69752000	Weak transcription	Fetal Brain Male	brain
10	chr16:69729200-69745000	Weak transcription	Spleen	Spleen
11	chr16:69729400-69744800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr16:69729400-69745000	Weak transcription	Pancreas	Pancrea
13	chr16:69729400-69760000	Weak transcription	Brain Germinal Matrix	brain
14	chr16:69729400-69760000	Weak transcription	Ovary	ovary
15	chr16:69729600-69745000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr16:69729800-69746200	Weak transcription	Aorta	Aorta
17	chr16:69729800-69746200	Weak transcription	Left Ventricle	heart
18	chr16:69729800-69748800	Weak transcription	Esophagus	oesophagus
19	chr16:69730000-69745200	Weak transcription	Thymus	Thymus
20	chr16:69730000-69745800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr16:69730000-69759000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr16:69730200-69746000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr16:69730400-69744800	Weak transcription	Colonic Mucosa	Colon
24	chr16:69730400-69747000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr16:69730600-69759800	Weak transcription	Fetal Brain Female	brain
26	chr16:69730800-69744600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr16:69730800-69759800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr16:69731000-69746000	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr16:69731800-69744400	Weak transcription	K562	blood
30	chr16:69731800-69745000	Weak transcription	Hela-S3	cervix
31	chr16:69731800-69746200	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr16:69731800-69759600	Weak transcription	Primary B cells from peripheral blood	blood
33	chr16:69731800-69759800	Weak transcription	Primary B cells from cord blood	blood
34	chr16:69731800-69759800	Weak transcription	Right Ventricle	heart
35	chr16:69732000-69746200	Weak transcription	Brain Substantia Nigra	brain
36	chr16:69732600-69744800	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr16:69732600-69745000	Weak transcription	Fetal Thymus	thymus
38	chr16:69733000-69744800	Weak transcription	Fetal Muscle Trunk	muscle
39	chr16:69733200-69745800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr16:69733400-69744800	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr16:69733800-69759800	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr16:69734800-69746200	Weak transcription	Fetal Intestine Large	intestine
43	chr16:69736000-69744600	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr16:69736000-69744800	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr16:69736000-69758600	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr16:69736600-69744400	Weak transcription	Adipose Nuclei	Adipose
47	chr16:69736600-69744400	Weak transcription	Brain Anterior Caudate	brain
48	chr16:69737000-69745400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr16:69737200-69758800	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr16:69737400-69752600	Strong transcription	HSMMtube	muscle

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