Variant report

Variant	rs35938360
Chromosome Location	chr8:130421846-130421847
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10956477	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11781612	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12543679	0.84[EUR][1000 genomes]
rs12548661	0.83[EUR][1000 genomes]
rs13259353	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13262640	0.84[EUR][1000 genomes]
rs1368139	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16904062	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16904064	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1813473	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28759297	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62523717	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs985687	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429942	chr8:130397818-130460011	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv968553	chr8:130416069-130423976	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv6394	chr8:130421502-130446035	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130410200-130434600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:130416800-130426600	Strong transcription	K562	blood
3	chr8:130418800-130424000	Weak transcription	Dnd41	blood
4	chr8:130419200-130423400	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr8:130419600-130423600	Weak transcription	Fetal Stomach	stomach
6	chr8:130419800-130423200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr8:130419800-130423600	Weak transcription	Fetal Muscle Leg	muscle
8	chr8:130419800-130425800	Weak transcription	Fetal Thymus	thymus
9	chr8:130419800-130427000	Weak transcription	Thymus	Thymus
10	chr8:130420000-130424000	Weak transcription	Brain Hippocampus Middle	brain
11	chr8:130421600-130423600	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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