Variant report

Variant	rs35941982
Chromosome Location	chr1:62011094-62011095
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12937141	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12938919	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12939530	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12940531	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12943959	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12944753	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12946078	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12946430	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12947734	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12948161	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12949275	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12951520	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1828836	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1960654	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2083822	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34591486	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35588365	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35896700	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71381432	0.82[ASN][1000 genomes]
rs7210670	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7213461	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7219140	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7225710	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8076585	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9747537	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv994970	chr1:61693951-62199657	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1006142	chr1:61696142-62119763	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv534980	chr1:61696142-62119763	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv916868	chr1:61700430-62119762	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1001052	chr1:61702011-62090670	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv817402	chr1:61703965-62119762	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv1010797	chr1:61703966-62125970	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv530494	chr1:61723918-62084045	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
9	nsv1000294	chr1:61746280-62350718	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62010600-62011800	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr1:62010800-62011800	Enhancers	Primary T cells from cord blood	blood
3	chr1:62011000-62011400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr1:62011000-62012000	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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