Variant report

Variant	rs35942580
Chromosome Location	chr12:45010221-45010222
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3378050	chr12:44963059-45264289	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv430506	chr12:45003342-45072343	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv983484	chr12:45007736-45010626	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
5	esv3334130	chr12:45010164-45010528	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44986800-45015800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr12:44998200-45024400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:44998800-45018200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr12:45003200-45014200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr12:45004600-45012600	Weak transcription	Brain Germinal Matrix	brain
6	chr12:45004800-45020800	Weak transcription	Fetal Brain Female	brain
7	chr12:45004800-45034800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr12:45004800-45043200	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr12:45005000-45023200	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr12:45005000-45031200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr12:45005000-45044200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr12:45005400-45010400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr12:45005600-45011600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr12:45009800-45010400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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