Variant report

Variant	rs35944620
Chromosome Location	chr2:49047225-49047226
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs12986921	0.80[EUR][1000 genomes]
rs12987006	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12988380	0.80[EUR][1000 genomes]
rs12988554	0.80[EUR][1000 genomes]
rs12991639	0.80[EUR][1000 genomes]
rs12991812	0.80[EUR][1000 genomes]
rs12993218	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12993342	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12993350	0.80[EUR][1000 genomes]
rs12994449	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12998973	0.80[EUR][1000 genomes]
rs12999088	0.80[EUR][1000 genomes]
rs13000493	0.80[EUR][1000 genomes]
rs13000963	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13000979	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13001380	0.83[EUR][1000 genomes]
rs13003416	0.80[EUR][1000 genomes]
rs13006849	0.80[EUR][1000 genomes]
rs13013520	0.80[EUR][1000 genomes]
rs13026051	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13026368	0.80[EUR][1000 genomes]
rs13026374	0.80[EUR][1000 genomes]
rs13033968	0.80[EUR][1000 genomes]
rs34096435	0.80[EUR][1000 genomes]
rs34139125	0.80[EUR][1000 genomes]
rs34246643	0.80[EUR][1000 genomes]
rs34316068	0.80[EUR][1000 genomes]
rs34375321	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34493890	0.80[EUR][1000 genomes]
rs34519361	0.80[EUR][1000 genomes]
rs34583302	0.80[EUR][1000 genomes]
rs34747271	0.80[EUR][1000 genomes]
rs34840154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34841582	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34851917	0.80[EUR][1000 genomes]
rs34912705	0.80[EUR][1000 genomes]
rs35031960	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35093053	0.80[EUR][1000 genomes]
rs35625756	0.80[EUR][1000 genomes]
rs35775057	0.80[EUR][1000 genomes]
rs35891136	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35935449	0.80[EUR][1000 genomes]
rs35975792	0.80[EUR][1000 genomes]
rs35988365	0.80[EUR][1000 genomes]
rs35989613	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36098594	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3935550	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4295062	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4477968	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4539840	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59605770	0.80[EUR][1000 genomes]
rs62135457	0.84[AFR][1000 genomes]
rs62137362	0.85[AFR][1000 genomes]
rs62137363	0.85[AFR][1000 genomes]
rs62137364	0.85[AFR][1000 genomes]
rs62137365	0.91[AFR][1000 genomes]
rs62137366	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62137368	0.92[AFR][1000 genomes]
rs62137386	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62137390	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62137393	0.87[AFR][1000 genomes]
rs62137394	0.87[AFR][1000 genomes]
rs62137396	0.87[AFR][1000 genomes]
rs62137397	0.87[AFR][1000 genomes]
rs62137398	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62137399	0.87[AFR][1000 genomes]
rs62137402	0.84[AFR][1000 genomes]
rs62137403	0.84[AFR][1000 genomes]
rs62137441	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs66524960	0.80[EUR][1000 genomes]
rs66593338	0.80[EUR][1000 genomes]
rs66709862	0.80[EUR][1000 genomes]
rs66713554	0.80[EUR][1000 genomes]
rs67198598	0.80[EUR][1000 genomes]
rs67386139	0.80[EUR][1000 genomes]
rs67412822	0.80[EUR][1000 genomes]
rs67476091	0.80[EUR][1000 genomes]
rs71407521	0.80[EUR][1000 genomes]
rs71407527	0.80[EUR][1000 genomes]
rs71407528	0.80[EUR][1000 genomes]
rs71407529	0.80[EUR][1000 genomes]
rs71407530	0.80[EUR][1000 genomes]
rs72811839	0.80[EUR][1000 genomes]
rs72811841	0.80[EUR][1000 genomes]
rs72811843	0.80[EUR][1000 genomes]
rs72811844	0.80[EUR][1000 genomes]
rs72811874	0.80[EUR][1000 genomes]
rs72811886	0.80[EUR][1000 genomes]
rs72884590	0.92[AFR][1000 genomes]
rs72886209	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002793	chr2:48771220-49466550	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1004965	chr2:48796170-49443587	Bivalent Enhancer Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv535684	chr2:48796170-49443587	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv498119	chr2:48808834-49422647	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv998864	chr2:49015878-49230000	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1014434	chr2:49016279-49053699	Enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1011016	chr2:49031921-49053699	Weak transcription ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2763577	chr2:49035249-49053711	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv518963	chr2:49038154-49052293	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1011157	chr2:49041121-49061439	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1008459	chr2:49041121-49062097	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv519859	chr2:49045984-49052293	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:48994600-49080200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr2:49046200-49047800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr2:49046600-49053200	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links