Variant report

Variant	rs35944960
Chromosome Location	chr18:54084235-54084236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11752270	0.80[ASN][1000 genomes]
rs11752287	0.83[ASN][1000 genomes]
rs11754167	0.82[ASN][1000 genomes]
rs11754682	0.80[ASN][1000 genomes]
rs11756347	0.82[ASN][1000 genomes]
rs13190766	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs13201060	0.80[ASN][1000 genomes]
rs13207064	0.80[ASN][1000 genomes]
rs13215166	0.80[ASN][1000 genomes]
rs34443655	0.80[ASN][1000 genomes]
rs34656055	0.80[ASN][1000 genomes]
rs35900147	0.80[ASN][1000 genomes]
rs59540076	0.80[ASN][1000 genomes]
rs62436813	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9375472	0.80[ASN][1000 genomes]
rs9375474	0.80[ASN][1000 genomes]
rs9388535	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs9398821	0.80[ASN][1000 genomes]
rs9398822	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909659	chr18:53918924-54134488	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv458082	chr18:53950927-54667823	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv577020	chr18:53950927-54667823	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv1065207	chr18:53951439-54241108	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv833662	chr18:53974695-54108188	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:54074600-54089000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr18:54082600-54088600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr18:54082600-54088600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr18:54083000-54088400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links