Variant report

Variant	rs35946591
Chromosome Location	chr19:38736485-38736486
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:38736023..38740050-chr19:38746676..38748498,3	K562	blood:
2	chr19:38736378..38738320-chr19:38779802..38781772,2	MCF-7	breast:
3	chr19:38736068..38737890-chr19:38826396..38828005,2	MCF-7	breast:
4	chr19:38734707..38741200-chr19:38793157..38796642,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000267748	Chromatin interaction
ENSG00000167642	Chromatin interaction
ENSG00000099338	Chromatin interaction
ENSG00000167641	Chromatin interaction
ENSG00000167644	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12975244	0.87[ASN][1000 genomes]
rs12981507	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12983492	0.87[ASN][1000 genomes]
rs3786872	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv833821	chr19:38629937-38756792	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv911657	chr19:38655449-38753786	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv1063471	chr19:38734744-39148392	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38720600-38740400	Weak transcription	Right Atrium	heart
2	chr19:38734600-38736800	Weak transcription	GM12878-XiMat	blood
3	chr19:38734600-38737000	Enhancers	Placenta	Placenta
4	chr19:38734800-38736600	Weak transcription	Osteobl	bone
5	chr19:38734800-38737000	Enhancers	Duodenum Mucosa	Duodenum
6	chr19:38734800-38737400	Weak transcription	Left Ventricle	heart
7	chr19:38734800-38738800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr19:38734800-38741200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr19:38734800-38741400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr19:38734800-38741400	Weak transcription	HMEC	breast
11	chr19:38734800-38743800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr19:38735000-38736600	Enhancers	Stomach Smooth Muscle	stomach
13	chr19:38735000-38736800	Weak transcription	Primary B cells from cord blood	blood
14	chr19:38735000-38736800	Weak transcription	Brain Anterior Caudate	brain
15	chr19:38735000-38737400	Weak transcription	Primary B cells from peripheral blood	blood
16	chr19:38735000-38738400	Weak transcription	HepG2	liver
17	chr19:38735000-38741200	Weak transcription	Fetal Lung	lung
18	chr19:38735000-38741200	Weak transcription	Lung	lung
19	chr19:38735000-38741400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr19:38735200-38736600	Weak transcription	Brain Angular Gyrus	brain
21	chr19:38735200-38738800	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr19:38735400-38736600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr19:38735400-38737200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr19:38735600-38737600	Enhancers	Adipose Nuclei	Adipose
25	chr19:38735600-38737600	Enhancers	NHLF	lung
26	chr19:38735600-38738400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr19:38735600-38739000	Enhancers	HSMMtube	muscle
28	chr19:38735800-38736800	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr19:38735800-38736800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr19:38735800-38736800	Weak transcription	Ovary	ovary
31	chr19:38735800-38737600	Weak transcription	Aorta	Aorta
32	chr19:38735800-38737600	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr19:38735800-38738200	Weak transcription	Fetal Muscle Trunk	muscle
34	chr19:38735800-38738600	Weak transcription	Colonic Mucosa	Colon
35	chr19:38735800-38738600	Weak transcription	Fetal Intestine Large	intestine
36	chr19:38735800-38738600	Weak transcription	Stomach Mucosa	stomach
37	chr19:38735800-38738800	Weak transcription	A549	lung
38	chr19:38735800-38741000	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr19:38735800-38741000	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr19:38735800-38741200	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr19:38735800-38741200	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr19:38735800-38741200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr19:38735800-38741200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr19:38735800-38741200	Weak transcription	Fetal Muscle Leg	muscle
45	chr19:38735800-38741200	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr19:38735800-38741200	Weak transcription	Hela-S3	cervix
47	chr19:38735800-38741400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr19:38735800-38741400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr19:38735800-38741600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr19:38735800-38742400	Weak transcription	K562	blood

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