Variant report

Variant	rs35948827
Chromosome Location	chr3:46641334-46641335
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10514714	0.84[EUR][1000 genomes]
rs34844178	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4683252	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv876738	chr3:46639048-46680063	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46628800-46651000	Weak transcription	Right Atrium	heart
2	chr3:46634800-46650800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:46635000-46641400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:46638600-46644800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:46640200-46641800	Enhancers	H9 Cell Line	embryonic stem cell
6	chr3:46640200-46641800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr3:46640200-46641800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr3:46640200-46641800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr3:46640200-46641800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:46640200-46642000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr3:46640200-46642000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:46640200-46642400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr3:46640400-46641800	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr3:46640400-46642000	Enhancers	H1 Cell Line	embryonic stem cell
15	chr3:46640600-46644400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:46641000-46641400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr3:46641200-46641400	Enhancers	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links