Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12891167	0.82[AFR][1000 genomes]
rs12897241	0.82[AFR][1000 genomes]
rs1520327	0.82[AFR][1000 genomes]
rs17109194	0.88[AFR][1000 genomes]
rs17109573	0.82[AFR][1000 genomes]
rs2238223	0.82[AFR][1000 genomes]
rs2238224	0.82[AFR][1000 genomes]
rs2238236	0.88[AFR][1000 genomes]
rs2238237	0.82[AFR][1000 genomes]
rs2238239	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2238240	0.90[EUR][1000 genomes]
rs2239262	0.82[AFR][1000 genomes]
rs2283399	0.82[AFR][1000 genomes]
rs2283400	0.82[AFR][1000 genomes]
rs34122902	0.82[AFR][1000 genomes]
rs35367207	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35413081	0.82[AFR][1000 genomes]
rs4903000	0.82[AFR][1000 genomes]
rs56263585	0.82[AFR][1000 genomes]
rs66823874	0.82[AFR][1000 genomes]
rs72721816	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1041492	chr14:72634606-72768970	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72653600-72683000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:72671600-72674800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr14:72672200-72679400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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