Variant report

Variant	rs35954676
Chromosome Location	chr1:151143960-151143961
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:150979242..150982570-chr1:151142275..151143963,3	K562	blood:
2	chr1:151136854..151140829-chr1:151140868..151144448,5	K562	blood:
3	chr1:151040466..151042934-chr1:151142330..151145207,2	K562	blood:
4	chr1:150973043..150975367-chr1:151142300..151144414,2	MCF-7	breast:
5	chr1:151142755..151144595-chr1:151209312..151211204,2	MCF-7	breast:
6	chr1:151136705..151140829-chr1:151140868..151144071,4	K562	blood:
7	chr1:151137725..151143993-chr1:151144904..151151967,18	K562	blood:

Variant related genes	Relation type
ENSG00000163156	Chromatin interaction
ENSG00000197622	Chromatin interaction
ENSG00000163155	Chromatin interaction
ENSG00000143409	Chromatin interaction
ENSG00000143363	Chromatin interaction
ENSG00000163157	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2233841	1.00[AMR][1000 genomes]
rs2233842	1.00[AMR][1000 genomes]
rs2233850	1.00[ASW][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2233855	1.00[YRI][hapmap]
rs41299615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61732647	0.84[AFR][1000 genomes]
rs7517596	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001897	chr1:150743271-151241600	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv535158	chr1:150743271-151241600	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv522840	chr1:150933723-151347746	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv916272	chr1:150961809-151557253	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	219 gene(s)	inside rSNPs	diseases
5	nsv831559	chr1:151109459-151239921	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
6	nsv831570	chr1:151129020-151281778	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	106 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151139600-151144800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:151139600-151145800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:151139600-151147000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr1:151139600-151148400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:151139600-151149800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:151139600-151158600	Strong transcription	Fetal Stomach	stomach
7	chr1:151139600-151158600	Strong transcription	Lung	lung
8	chr1:151139600-151161600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:151139800-151144000	Strong transcription	Brain Cingulate Gyrus	brain
10	chr1:151139800-151144000	Strong transcription	Fetal Kidney	kidney
11	chr1:151139800-151144000	Strong transcription	Rectal Mucosa Donor 31	rectum
12	chr1:151139800-151144000	Strong transcription	Sigmoid Colon	Sigmoid Colon
13	chr1:151139800-151144200	Strong transcription	HUES6 Cell Line	embryonic stem cell
14	chr1:151139800-151144200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:151139800-151144200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr1:151139800-151144400	Strong transcription	Primary T cells from cord blood	blood
17	chr1:151139800-151146800	Weak transcription	Fetal Brain Male	brain
18	chr1:151139800-151147000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr1:151139800-151148200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr1:151139800-151149000	Weak transcription	Small Intestine	intestine
21	chr1:151139800-151158600	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr1:151139800-151158600	Strong transcription	Fetal Intestine Small	intestine
23	chr1:151139800-151159000	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr1:151139800-151159400	Strong transcription	Fetal Brain Female	brain
25	chr1:151140000-151144000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr1:151140000-151144000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr1:151140000-151144000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr1:151140000-151144000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr1:151140000-151144000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr1:151140000-151144000	Strong transcription	Adipose Nuclei	Adipose
31	chr1:151140000-151144000	Strong transcription	NHDF-Ad	bronchial
32	chr1:151140000-151144200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr1:151140000-151144200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr1:151140000-151144200	Strong transcription	Liver	Liver
35	chr1:151140000-151144200	Strong transcription	Brain Hippocampus Middle	brain
36	chr1:151140000-151144200	Strong transcription	Dnd41	blood
37	chr1:151140000-151144400	Strong transcription	Cortex derived primary cultured neurospheres	brain
38	chr1:151140000-151144600	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr1:151140000-151145200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr1:151140000-151145800	Weak transcription	GM12878-XiMat	blood
41	chr1:151140000-151146200	Strong transcription	Fetal Muscle Trunk	muscle
42	chr1:151140000-151146800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr1:151140000-151146800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr1:151140000-151146800	Weak transcription	NH-A	brain
45	chr1:151140000-151147200	Strong transcription	Brain Germinal Matrix	brain
46	chr1:151140000-151149400	Weak transcription	K562	blood
47	chr1:151140000-151153400	Strong transcription	Placenta	Placenta
48	chr1:151140000-151158600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr1:151140000-151158600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr1:151140000-151158600	Strong transcription	Duodenum Mucosa	Duodenum

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