Variant report

Variant	rs35955279
Chromosome Location	chr15:40568040-40568041
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:40567372..40572340-chr15:40598668..40601169,4	K562	blood:
2	chr15:40513371..40515548-chr15:40567016..40569593,2	K562	blood:
3	chr15:40567195..40571331-chr15:40615416..40618233,4	K562	blood:
4	chr15:40567044..40569798-chr15:40602403..40604424,2	K562	blood:

Variant related genes	Relation type
ENSG00000259330	Chromatin interaction
ENSG00000137841	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs35668022	1.00[AMR][1000 genomes]
rs55738516	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv904095	chr15:40525430-40591570	Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv471240	chr15:40528155-40595627	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
5	nsv904096	chr15:40550149-40604777	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv510660	chr15:40552906-40721883	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
7	nsv904097	chr15:40555065-40595627	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv517541	chr15:40557268-40595627	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	esv1850798	chr15:40560607-40622191	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
10	nsv904098	chr15:40564576-40586537	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv457118	chr15:40565705-40606484	Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
12	nsv569227	chr15:40565705-40606484	Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40546000-40571800	Weak transcription	Right Ventricle	heart
2	chr15:40546200-40568200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr15:40551400-40571000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:40553800-40570400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr15:40557000-40568200	Weak transcription	Lung	lung
6	chr15:40557200-40571800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:40559000-40570000	Weak transcription	Brain Anterior Caudate	brain
8	chr15:40559200-40570000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr15:40559400-40570200	Weak transcription	Brain Angular Gyrus	brain
10	chr15:40559400-40571600	Weak transcription	Brain Hippocampus Middle	brain
11	chr15:40559600-40568800	Weak transcription	Fetal Brain Female	brain
12	chr15:40559600-40569000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:40559600-40569200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr15:40559600-40570000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr15:40559600-40570400	Strong transcription	Esophagus	oesophagus
16	chr15:40559600-40571800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr15:40560200-40568200	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr15:40560800-40571800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr15:40564400-40569400	Strong transcription	NHEK	skin
20	chr15:40565600-40571800	Weak transcription	Right Atrium	heart
21	chr15:40566200-40570000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr15:40566400-40571800	Weak transcription	Gastric	stomach
23	chr15:40566600-40569200	Enhancers	Adipose Nuclei	Adipose
24	chr15:40567000-40568200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr15:40567000-40568200	Weak transcription	Pancreas	Pancrea
26	chr15:40567000-40569000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr15:40567000-40569600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr15:40567000-40569600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr15:40567000-40569800	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr15:40567000-40569800	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr15:40567000-40569800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr15:40567000-40570600	Weak transcription	Fetal Intestine Large	intestine
33	chr15:40567000-40571800	Weak transcription	HMEC	breast
34	chr15:40567200-40568200	Enhancers	Primary hematopoietic stem cells	blood
35	chr15:40567200-40568200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr15:40567200-40569400	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr15:40567200-40572000	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr15:40567400-40569800	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr15:40567400-40569800	Weak transcription	K562	blood
40	chr15:40567400-40570200	Weak transcription	Stomach Mucosa	stomach
41	chr15:40567400-40571000	Weak transcription	Fetal Heart	heart
42	chr15:40567600-40568200	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr15:40567600-40569200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr15:40567600-40570000	Strong transcription	Fetal Intestine Small	intestine
45	chr15:40567800-40568200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr15:40567800-40568200	Enhancers	Fetal Thymus	thymus
47	chr15:40567800-40569600	Strong transcription	Placenta	Placenta
48	chr15:40568000-40568200	Enhancers	Primary B cells from cord blood	blood
49	chr15:40568000-40568200	Enhancers	Spleen	Spleen
50	chr15:40568000-40568600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin

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