Variant report

Variant	rs35957083
Chromosome Location	chr1:226924201-226924202
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11804915	1.00[AMR][1000 genomes]
rs58855513	1.00[AMR][1000 genomes]
rs7537310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997468	chr1:226858660-226975311	Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv535316	chr1:226858660-226975311	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv3338179	chr1:226923854-226926702	Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226891800-226924800	Weak transcription	Aorta	Aorta
2	chr1:226910000-226925000	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
3	chr1:226912400-226924600	Weak transcription	Ovary	ovary
4	chr1:226912800-226925400	Weak transcription	Stomach Mucosa	stomach
5	chr1:226915000-226925000	Transcr. at gene 5' and 3'	Primary T cells fromperipheralblood	blood
6	chr1:226918600-226925000	Transcr. at gene 5' and 3'	Thymus	Thymus
7	chr1:226918800-226925000	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
8	chr1:226918800-226925800	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:226919200-226924400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr1:226920000-226925200	Transcr. at gene 5' and 3'	Primary mononuclear cells fromperipheralblood	Blood
11	chr1:226920400-226924400	Genic enhancers	Spleen	Spleen
12	chr1:226920400-226924600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr1:226920400-226924600	Transcr. at gene 5' and 3'	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr1:226920400-226924600	Genic enhancers	Fetal Lung	lung
15	chr1:226920400-226924800	Transcr. at gene 5' and 3'	Primary T cells from cord blood	blood
16	chr1:226920400-226924800	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
17	chr1:226920400-226925000	Transcr. at gene 5' and 3'	Primary T helper cells fromperipheralblood	blood
18	chr1:226920400-226927000	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
19	chr1:226920600-226924400	Genic enhancers	Primary monocytes fromperipheralblood	blood
20	chr1:226920600-226924600	Transcr. at gene 5' and 3'	Adipose Nuclei	Adipose
21	chr1:226920600-226924800	Strong transcription	NHEK	skin
22	chr1:226920600-226925000	Transcr. at gene 5' and 3'	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr1:226920600-226925000	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr1:226920600-226925000	Transcr. at gene 5' and 3'	Fetal Muscle Leg	muscle
25	chr1:226920800-226927200	Active TSS	Psoas Muscle	Psoas
26	chr1:226921000-226924800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr1:226921000-226927600	Active TSS	Right Atrium	heart
28	chr1:226921200-226924800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
29	chr1:226921600-226924600	Transcr. at gene 5' and 3'	Brain Substantia Nigra	brain
30	chr1:226921600-226924600	Transcr. at gene 5' and 3'	Duodenum Mucosa	Duodenum
31	chr1:226921800-226924400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr1:226921800-226924400	Transcr. at gene 5' and 3'	Rectal Mucosa Donor 29	rectum
33	chr1:226921800-226924600	Transcr. at gene 5' and 3'	Brain Anterior Caudate	brain
34	chr1:226922000-226924800	Transcr. at gene 5' and 3'	Brain Hippocampus Middle	brain
35	chr1:226922200-226925000	Transcr. at gene 5' and 3'	Primary T killer naive cells fromperipheralblood	blood
36	chr1:226922400-226924800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
37	chr1:226922400-226925000	Transcr. at gene 5' and 3'	Primary T helper naive cells from peripheral blood	blood
38	chr1:226922400-226925000	Enhancers	Liver	Liver
39	chr1:226922600-226924400	Flanking Active TSS	Brain Angular Gyrus	brain
40	chr1:226922600-226924600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr1:226922600-226924600	Transcr. at gene 5' and 3'	Colon Smooth Muscle	Colon
42	chr1:226922600-226924600	Weak transcription	HMEC	breast
43	chr1:226922600-226924600	Weak transcription	NHDF-Ad	bronchial
44	chr1:226922600-226924800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr1:226922600-226924800	Transcr. at gene 5' and 3'	Fetal Muscle Trunk	muscle
46	chr1:226922600-226925000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr1:226922600-226927000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
48	chr1:226922800-226925200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr1:226922800-226927000	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
50	chr1:226923000-226924400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links