Variant report

Variant	rs35957680
Chromosome Location	chr17:16935156-16935157
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:16931293..16933179-chr17:16934223..16937186,2	MCF-7	breast:
2	chr17:16931573..16934044-chr17:16934220..16938314,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058863	chr17:16812121-16943780	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv543227	chr17:16812121-16943780	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv907727	chr17:16892265-16938582	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv543231	chr17:16926227-16950644	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv978376	chr17:16934418-16938973	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16930200-16936200	Enhancers	Fetal Muscle Leg	muscle
2	chr17:16930400-16936600	Enhancers	Fetal Muscle Trunk	muscle
3	chr17:16930600-16936000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr17:16930600-16936200	Enhancers	HMEC	breast
5	chr17:16930600-16937600	Enhancers	HSMMtube	muscle
6	chr17:16930800-16935800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr17:16930800-16936000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr17:16931000-16936000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr17:16931400-16936000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr17:16931600-16936400	Enhancers	Fetal Lung	lung
11	chr17:16932000-16935200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr17:16932200-16935200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr17:16932200-16935200	Weak transcription	NHLF	lung
14	chr17:16932200-16939800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr17:16932400-16935200	Weak transcription	Spleen	Spleen
16	chr17:16932400-16940600	Enhancers	HSMM	muscle
17	chr17:16932600-16936000	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr17:16932800-16944200	Weak transcription	Fetal Brain Female	brain
19	chr17:16933000-16935200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr17:16933000-16935400	Enhancers	A549	lung
21	chr17:16933000-16935600	Weak transcription	Esophagus	oesophagus
22	chr17:16933200-16935200	Weak transcription	Duodenum Mucosa	Duodenum
23	chr17:16933200-16935200	Weak transcription	Fetal Kidney	kidney
24	chr17:16933200-16935200	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr17:16933200-16935400	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr17:16933200-16936400	Enhancers	Brain Hippocampus Middle	brain
27	chr17:16933200-16936600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr17:16933200-16936800	Weak transcription	Fetal Thymus	thymus
29	chr17:16933400-16936200	Enhancers	Brain Cingulate Gyrus	brain
30	chr17:16933400-16936200	Enhancers	HUVEC	blood vessel
31	chr17:16933600-16935200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr17:16933600-16935200	Enhancers	HepG2	liver
33	chr17:16933600-16935200	Weak transcription	K562	blood
34	chr17:16933600-16935400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr17:16933600-16935600	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr17:16933600-16935800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr17:16933600-16936000	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr17:16933600-16936000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr17:16933600-16936200	Enhancers	Hela-S3	cervix
40	chr17:16933600-16936200	Enhancers	NH-A	brain
41	chr17:16933800-16935200	Weak transcription	Brain Anterior Caudate	brain
42	chr17:16933800-16935400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr17:16933800-16936000	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr17:16933800-16936200	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr17:16933800-16936200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr17:16933800-16936200	Enhancers	Fetal Heart	heart
47	chr17:16933800-16936800	Weak transcription	Primary hematopoietic stem cells	blood
48	chr17:16934000-16935400	Weak transcription	Fetal Intestine Large	intestine
49	chr17:16934000-16935400	Weak transcription	Fetal Intestine Small	intestine
50	chr17:16934000-16936000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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