Variant report

Variant	rs35958400
Chromosome Location	chr6:3995398-3995399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:3988050..3991356-chr6:3993338..3995417,3	K562	blood:
2	chr6:3991492..3994091-chr6:3995382..3997946,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11751316	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13191877	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13191921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13199114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13204868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13205077	0.92[EUR][1000 genomes]
rs13207795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13209954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13214951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13220367	0.92[EUR][1000 genomes]
rs35539914	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532020	chr6:3417520-4140257	Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1022968	chr6:3862744-4272502	Enhancers Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv538106	chr6:3862744-4272502	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv1800199	chr6:3986611-4014872	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:3979000-4003200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr6:3980600-4003600	Weak transcription	Primary B cells from cord blood	blood
3	chr6:3985400-4011000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:3987800-3997200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:3987800-3998800	Weak transcription	Primary T cells from cord blood	blood
6	chr6:3988200-3997000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:3991200-4003800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr6:3991200-4008400	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr6:3991200-4010400	Weak transcription	K562	blood
10	chr6:3991200-4011000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:3991200-4012200	Weak transcription	Left Ventricle	heart
12	chr6:3991400-3996800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:3991400-3996800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr6:3991400-3996800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:3991400-3996800	Weak transcription	Fetal Brain Male	brain
16	chr6:3991400-3997000	Weak transcription	Psoas Muscle	Psoas
17	chr6:3991400-3997400	Weak transcription	Brain Anterior Caudate	brain
18	chr6:3991400-4003600	Weak transcription	Primary B cells from peripheral blood	blood
19	chr6:3991400-4011000	Weak transcription	Lung	lung
20	chr6:3991400-4016800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr6:3991600-3996800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:3991600-3996800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr6:3991600-3996800	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr6:3991600-3996800	Weak transcription	HSMMtube	muscle
25	chr6:3991600-3997000	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr6:3991600-3997000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:3991600-3997000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:3991600-3997200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr6:3991600-4000200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr6:3991600-4001800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr6:3991600-4003000	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr6:3991600-4003600	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr6:3991600-4007000	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr6:3991600-4008000	Weak transcription	Liver	Liver
35	chr6:3991600-4008400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr6:3991600-4008400	Weak transcription	Fetal Kidney	kidney
37	chr6:3991600-4008400	Weak transcription	HSMM	muscle
38	chr6:3991600-4017200	Weak transcription	Fetal Brain Female	brain
39	chr6:3991600-4017400	Weak transcription	Stomach Smooth Muscle	stomach
40	chr6:3991600-4017600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:3991800-3996200	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr6:3991800-3996600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr6:3991800-3996600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:3991800-3996600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:3991800-3996800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr6:3991800-3996800	Weak transcription	Fetal Stomach	stomach
47	chr6:3991800-3996800	Weak transcription	HMEC	breast
48	chr6:3991800-3997000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr6:3991800-3997000	Weak transcription	Colon Smooth Muscle	Colon
50	chr6:3991800-3997200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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