Variant report

Variant	rs35964005
Chromosome Location	chr3:113445179-113445180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:113414307..113416496-chr3:113445086..113447367,2	K562	blood:
2	chr3:113440653..113444189-chr3:113445171..113447861,3	K562	blood:
3	chr3:113440653..113444189-chr3:113444738..113447861,4	K562	blood:
4	chr3:113445084..113447800-chr3:113453613..113455367,2	MCF-7	breast:
5	chr3:113442105..113445216-chr3:113449989..113452556,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176542	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13080667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13085192	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34646238	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34769551	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs35113220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1004000	chr3:113116778-113513899	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	esv1799124	chr3:113426201-113468350	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv482804	chr3:113432431-113581672	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv519099	chr3:113436847-113450495	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113432200-113447000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:113432800-113463000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:113432800-113463000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:113433000-113445400	Weak transcription	Fetal Intestine Small	intestine
5	chr3:113433000-113460000	Weak transcription	Aorta	Aorta
6	chr3:113433600-113450200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:113435000-113463000	Weak transcription	Brain Germinal Matrix	brain
8	chr3:113435200-113450400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr3:113435200-113463000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr3:113435200-113463000	Weak transcription	Esophagus	oesophagus
11	chr3:113435400-113456600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr3:113435400-113462600	Weak transcription	Brain Angular Gyrus	brain
13	chr3:113435600-113445600	Weak transcription	Right Ventricle	heart
14	chr3:113435600-113449400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr3:113435600-113462200	Weak transcription	Thymus	Thymus
16	chr3:113436000-113462800	Weak transcription	Spleen	Spleen
17	chr3:113436800-113450000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr3:113437200-113445200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr3:113437200-113445400	Weak transcription	Fetal Stomach	stomach
20	chr3:113437200-113445800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:113437200-113445800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr3:113437200-113456600	Weak transcription	Pancreas	Pancrea
23	chr3:113437200-113464000	Weak transcription	Lung	lung
24	chr3:113439600-113446200	Weak transcription	Fetal Heart	heart
25	chr3:113440000-113450800	Weak transcription	Primary hematopoietic stem cells	blood
26	chr3:113440400-113455200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr3:113440600-113447600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr3:113440600-113455000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr3:113440800-113445600	Weak transcription	Left Ventricle	heart
30	chr3:113440800-113447200	Weak transcription	Primary B cells from cord blood	blood
31	chr3:113440800-113447200	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr3:113440800-113447800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr3:113440800-113449600	Weak transcription	Colon Smooth Muscle	Colon
34	chr3:113440800-113450600	Weak transcription	Small Intestine	intestine
35	chr3:113440800-113455000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr3:113440800-113455200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr3:113440800-113458200	Weak transcription	HSMMtube	muscle
38	chr3:113440800-113461200	Weak transcription	Fetal Muscle Leg	muscle
39	chr3:113440800-113461800	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr3:113440800-113463000	Weak transcription	Fetal Muscle Trunk	muscle
41	chr3:113440800-113463600	Weak transcription	Ovary	ovary
42	chr3:113441000-113445400	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr3:113441000-113446200	Weak transcription	Brain Anterior Caudate	brain
44	chr3:113441000-113448400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr3:113441000-113448800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr3:113441000-113450400	Weak transcription	K562	blood
47	chr3:113441000-113455600	Weak transcription	Rectal Smooth Muscle	rectum
48	chr3:113441200-113455600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr3:113441200-113455600	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr3:113441400-113447000	Weak transcription	Brain Inferior Temporal Lobe	brain

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