Variant report

Variant	rs359643
Chromosome Location	chr7:128000272-128000273
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr7:127999704-128005454	SK-N-SH	brain:	n/a	chr7:128001515-128001531 chr7:128001869-128001885 chr7:128001522-128001531 chr7:128003957-128003966 chr7:128001589-128001605 chr7:128001670-128001679 chr7:128003305-128003319 chr7:128001721-128001737 chr7:128003956-128003970 chr7:128003346-128003362 chr7:128001590-128001606 chr7:128003823-128003832
2	POLR2A	chr7:128000242-128001516	HL-60	blood:	n/a	n/a
3	MXI1	chr7:127999698-128004914	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:127997986..128000354-chr7:128001685..128004213,3	K562	blood:

Variant related genes	Relation type
PRRT4	TF binding region
ENSG00000224940	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs359641	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831124	chr7:127970345-128147910	Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv889191	chr7:127973133-128073326	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv608400	chr7:127978820-128048194	Weak transcription Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
4	esv2493565	chr7:127985695-128053377	Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	esv3478325	chr7:127986726-128053483	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	esv3478326	chr7:127986726-128053483	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv365384	chr7:127997292-128001042	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127992800-128000600	Weak transcription	Right Atrium	heart
2	chr7:127997000-128000400	Enhancers	Adipose Nuclei	Adipose
3	chr7:127997000-128001000	Weak transcription	HSMMtube	muscle
4	chr7:127997200-128001000	Weak transcription	Left Ventricle	heart
5	chr7:127997400-128000400	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr7:127997400-128000400	Weak transcription	HSMM	muscle
7	chr7:127997600-128000400	Weak transcription	Right Ventricle	heart
8	chr7:127997600-128000400	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr7:127997600-128000600	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr7:127997600-128000800	Enhancers	Primary B cells from cord blood	blood
11	chr7:127998000-128000800	Weak transcription	Fetal Heart	heart
12	chr7:127998200-128001000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr7:127998400-128000400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr7:127999000-128000800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr7:127999400-128000400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr7:127999800-128000800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr7:128000000-128000400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
18	chr7:128000000-128000400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:128000000-128000400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
20	chr7:128000000-128000400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
21	chr7:128000000-128000400	Bivalent Enhancer	Brain Germinal Matrix	brain
22	chr7:128000000-128000400	Bivalent Enhancer	Fetal Lung	lung
23	chr7:128000000-128000400	Bivalent Enhancer	Fetal Stomach	stomach
24	chr7:128000000-128000600	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
25	chr7:128000000-128000600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr7:128000000-128000600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
27	chr7:128000000-128000600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
28	chr7:128000000-128000600	Bivalent Enhancer	Fetal Muscle Leg	muscle
29	chr7:128000000-128002200	Enhancers	Spleen	Spleen
30	chr7:128000200-128000400	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
31	chr7:128000200-128000400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr7:128000200-128000400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr7:128000200-128000400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
34	chr7:128000200-128000400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr7:128000200-128000600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
36	chr7:128000200-128000600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
37	chr7:128000200-128000600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
38	chr7:128000200-128000600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
39	chr7:128000200-128000600	Enhancers	Ovary	ovary
40	chr7:128000200-128000800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr7:128000200-128000800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr7:128000200-128000800	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr7:128000200-128000800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr7:128000200-128000800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr7:128000200-128000800	Bivalent Enhancer	Fetal Thymus	thymus
46	chr7:128000200-128001000	Enhancers	Liver	Liver
47	chr7:128000200-128001000	Enhancers	Lung	lung
48	chr7:128000200-128001200	Bivalent Enhancer	Fetal Brain Male	brain
49	chr7:128000200-128001200	Bivalent Enhancer	Placenta	Placenta
50	chr7:128000200-128001400	Flanking Bivalent TSS/Enh	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links