Variant report

Variant	rs359662
Chromosome Location	chr7:127985753-127985754
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11554671	1.00[EUR][1000 genomes]
rs17152005	0.85[GIH][hapmap];1.00[MEX][hapmap]
rs359660	1.00[EUR][1000 genomes]
rs4728100	1.00[MEX][hapmap]
rs61733109	1.00[EUR][1000 genomes]
rs6467173	1.00[EUR][1000 genomes]
rs6959976	1.00[EUR][1000 genomes]
rs7804286	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831124	chr7:127970345-128147910	Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv889191	chr7:127973133-128073326	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv608400	chr7:127978820-128048194	Weak transcription Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
4	esv2493565	chr7:127985695-128053377	Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127984000-127986400	Weak transcription	Small Intestine	intestine
2	chr7:127984000-127989400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:127984400-127987600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr7:127984400-127987800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:127984400-127987800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr7:127984400-127987800	Weak transcription	Brain Germinal Matrix	brain
7	chr7:127984400-127987800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr7:127984400-127987800	Weak transcription	Fetal Muscle Leg	muscle
9	chr7:127984600-127987400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr7:127984600-127987800	Weak transcription	Brain Anterior Caudate	brain
11	chr7:127984600-127989200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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