Variant report

Variant	rs35967153
Chromosome Location	chr1:210032212-210032213
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:210023266..210025244-chr1:210030521..210032417,2	MCF-7	breast:
2	chr1:210022253..210024519-chr1:210030671..210033538,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11579771	0.80[AMR][1000 genomes]
rs2049997	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4844497	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4844907	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7548533	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9430019	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv873139	chr1:209828955-210050794	Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35967153	SYT14	cis	Nerve Tibial	GTEx

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210001800-210034000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:210017600-210041200	Weak transcription	Fetal Brain Male	brain
3	chr1:210018000-210032800	Weak transcription	Small Intestine	intestine
4	chr1:210019000-210033800	Weak transcription	Fetal Heart	heart
5	chr1:210025000-210035800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:210026200-210033200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr1:210026200-210035400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:210026200-210035600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:210027600-210032400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr1:210027600-210034200	Weak transcription	HMEC	breast
11	chr1:210027600-210034600	Weak transcription	K562	blood
12	chr1:210027600-210036200	Weak transcription	Fetal Lung	lung
13	chr1:210027600-210036800	Weak transcription	HSMM	muscle
14	chr1:210027800-210032800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:210027800-210034200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr1:210027800-210034400	Weak transcription	NH-A	brain
17	chr1:210027800-210034800	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr1:210027800-210035000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr1:210027800-210035400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr1:210028000-210033000	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr1:210028000-210033000	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr1:210028000-210033000	Weak transcription	HUVEC	blood vessel
23	chr1:210028000-210033200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr1:210028000-210033400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr1:210028000-210034000	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr1:210028000-210034200	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr1:210028000-210036200	Weak transcription	HSMMtube	muscle
28	chr1:210028200-210032600	Weak transcription	Pancreas	Pancrea
29	chr1:210028200-210033200	Weak transcription	NHLF	lung
30	chr1:210028200-210033600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr1:210028200-210034200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr1:210028200-210036400	Weak transcription	Hela-S3	cervix
33	chr1:210028200-210042400	Weak transcription	NHDF-Ad	bronchial
34	chr1:210028400-210034200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr1:210028400-210034600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr1:210028400-210036800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr1:210028400-210037400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr1:210028400-210039600	Weak transcription	Primary hematopoietic stem cells	blood
39	chr1:210028800-210033800	Weak transcription	Stomach Smooth Muscle	stomach
40	chr1:210028800-210034000	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr1:210028800-210034200	Weak transcription	Adipose Nuclei	Adipose
42	chr1:210028800-210034200	Weak transcription	Liver	Liver
43	chr1:210028800-210034400	Weak transcription	NHEK	skin
44	chr1:210028800-210036800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr1:210029000-210032600	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr1:210029000-210033200	Weak transcription	Esophagus	oesophagus
47	chr1:210029000-210033600	Weak transcription	Osteobl	bone
48	chr1:210029200-210033400	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr1:210029200-210034200	Weak transcription	Brain Hippocampus Middle	brain
50	chr1:210029200-210035800	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links