Variant report

Variant	rs35967565
Chromosome Location	chr17:66485642-66485643
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833523	chr17:66343323-66510461	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
2	esv3419888	chr17:66484382-66486930	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3381318	chr17:66484457-66486705	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66467800-66487000	Weak transcription	Right Atrium	heart
2	chr17:66478400-66487600	Weak transcription	Gastric	stomach
3	chr17:66480800-66490600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr17:66481400-66486000	Weak transcription	Adipose Nuclei	Adipose
5	chr17:66481400-66488200	Weak transcription	Brain Hippocampus Middle	brain
6	chr17:66481600-66487000	Weak transcription	Brain Substantia Nigra	brain
7	chr17:66481800-66486200	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr17:66482000-66487000	Weak transcription	Placenta	Placenta
9	chr17:66482400-66486200	Weak transcription	Left Ventricle	heart
10	chr17:66482400-66486400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr17:66482400-66486400	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr17:66482400-66487000	Weak transcription	Ovary	ovary
13	chr17:66482600-66487800	Weak transcription	Liver	Liver
14	chr17:66483000-66487000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr17:66483600-66486400	Weak transcription	Spleen	Spleen
16	chr17:66484400-66487600	Weak transcription	Esophagus	oesophagus
17	chr17:66484600-66486200	Weak transcription	Primary B cells from cord blood	blood
18	chr17:66484600-66486200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr17:66484600-66486200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr17:66484600-66486200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr17:66484600-66486800	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr17:66484600-66487600	Weak transcription	HepG2	liver
23	chr17:66484800-66486800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr17:66484800-66487000	Weak transcription	Duodenum Mucosa	Duodenum
25	chr17:66485000-66486000	Weak transcription	Primary B cells from peripheral blood	blood
26	chr17:66485000-66486200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr17:66485000-66486200	Weak transcription	GM12878-XiMat	blood
28	chr17:66485000-66487800	Weak transcription	Fetal Thymus	thymus
29	chr17:66485600-66488200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links