Variant report

Variant	rs35967764
Chromosome Location	chr2:152484540-152484541
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12612539	1.00[EUR][1000 genomes]
rs12612655	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12619249	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12621850	1.00[EUR][1000 genomes]
rs12623646	1.00[EUR][1000 genomes]
rs13413290	1.00[EUR][1000 genomes]
rs16830087	1.00[EUR][1000 genomes]
rs16830088	1.00[EUR][1000 genomes]
rs16830140	1.00[EUR][1000 genomes]
rs16830170	1.00[EUR][1000 genomes]
rs16830173	1.00[EUR][1000 genomes]
rs16830174	1.00[EUR][1000 genomes]
rs16830189	1.00[EUR][1000 genomes]
rs16830216	1.00[EUR][1000 genomes]
rs16830236	1.00[EUR][1000 genomes]
rs3213817	1.00[EUR][1000 genomes]
rs41525550	1.00[EUR][1000 genomes]
rs6730990	1.00[EUR][1000 genomes]
rs7569133	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934136	chr2:152308156-152664443	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1005746	chr2:152361972-153059840	Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv535984	chr2:152361972-153059840	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv2974	chr2:152401495-152499455	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv469804	chr2:152404429-152570882	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv482520	chr2:152404429-152570882	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:152460600-152489200	Weak transcription	Psoas Muscle	Psoas
2	chr2:152465400-152491400	Weak transcription	Primary B cells from cord blood	blood
3	chr2:152467800-152491400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr2:152472000-152491800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr2:152477600-152487000	Strong transcription	Skeletal Muscle Female	skeletal muscle
6	chr2:152482000-152502400	Strong transcription	Fetal Muscle Leg	muscle
7	chr2:152482000-152507600	Strong transcription	Fetal Muscle Trunk	muscle
8	chr2:152482800-152493800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr2:152482800-152494800	Weak transcription	Gastric	stomach
10	chr2:152483200-152485400	Genic enhancers	Skeletal Muscle Male	skeletal muscle
11	chr2:152483400-152488200	Strong transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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