Variant report

Variant	rs35975590
Chromosome Location	chrY:7349000-7349001
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11884622	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11885393	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11887387	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11891262	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11899300	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11900654	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11901992	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11902437	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1446552	0.98[ASN][1000 genomes]
rs1524370	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16828606	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16828609	1.00[ASN][1000 genomes]
rs34415030	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35180858	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35431687	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56887986	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57192354	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57905160	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60061051	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60973488	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61319805	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6650766	0.98[ASN][1000 genomes]
rs66820471	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6706461	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67081781	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67148212	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67201811	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6759300	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67778375	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67852977	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67948770	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72618898	0.81[ASN][1000 genomes]
rs72618899	0.86[ASN][1000 genomes]
rs72618900	0.93[ASN][1000 genomes]
rs72618901	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72618902	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72620204	0.98[ASN][1000 genomes]
rs72620205	0.95[ASN][1000 genomes]
rs72620209	0.98[ASN][1000 genomes]
rs72620210	0.98[ASN][1000 genomes]
rs7561976	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7582000	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7595203	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870093	chrY:7286569-7512591	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrY:7326800-7350200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chrY:7337000-7360600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chrY:7337800-7370200	Weak transcription	HSMM	muscle

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