Variant report

Variant	rs35978142
Chromosome Location	chr13:49820222-49820223
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs71434464	0.94[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv832607	chr13:49756458-49920894	Flanking Bivalent TSS/Enh Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv900069	chr13:49815405-49976393	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49808000-49821200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr13:49816800-49820800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr13:49817200-49821400	Weak transcription	Fetal Stomach	stomach
4	chr13:49817400-49820800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr13:49818400-49821000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr13:49818400-49821200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr13:49818400-49821200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr13:49818600-49821400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr13:49818800-49820600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr13:49819200-49821200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr13:49819800-49821000	Weak transcription	Fetal Intestine Large	intestine
12	chr13:49820000-49821000	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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