Variant report

Variant	rs35981065
Chromosome Location	chr11:9591898-9591899
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:9589767-9592014	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:9589863..9592978-chr11:9632988..9635615,3	K562	blood:
2	chr11:9590419..9592271-chr2:43454961..43457275,2	MCF-7	breast:
3	chr11:9589366..9592285-chr11:9609804..9612652,2	MCF-7	breast:
4	chr11:9587790..9592116-chr11:9635065..9637852,3	MCF-7	breast:
5	chr11:9480226..9484903-chr11:9591788..9598525,12	MCF-7	breast:
6	chr11:9560214..9562995-chr11:9591613..9593139,2	MCF-7	breast:
7	chr11:9480903..9485608-chr11:9587733..9592274,8	MCF-7	breast:

No data

Variant related genes	Relation type
WEE1	TF binding region
ENSG00000268403	Chromatin interaction
ENSG00000166478	Chromatin interaction
ENSG00000234936	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1049403	0.88[EUR][1000 genomes]
rs10770042	0.88[EUR][1000 genomes]
rs10840263	0.87[EUR][1000 genomes]
rs11042426	0.84[EUR][1000 genomes]
rs11042431	0.88[EUR][1000 genomes]
rs12799030	0.88[EUR][1000 genomes]
rs7131557	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7940672	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427882	chr11:9431600-9626580	Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv553467	chr11:9518551-9648721	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9584200-9594400	Enhancers	Stomach Mucosa	stomach
2	chr11:9584200-9594400	Weak transcription	Spleen	Spleen
3	chr11:9585200-9593600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:9585200-9594400	Weak transcription	Esophagus	oesophagus
5	chr11:9585200-9594400	Weak transcription	Lung	lung
6	chr11:9586400-9594200	Enhancers	Fetal Intestine Small	intestine
7	chr11:9586600-9594000	Enhancers	Placenta	Placenta
8	chr11:9586600-9594200	Enhancers	Fetal Intestine Large	intestine
9	chr11:9588000-9594400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr11:9588000-9594400	Weak transcription	Gastric	stomach
11	chr11:9588600-9593800	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr11:9588600-9594000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr11:9589600-9594200	Enhancers	Primary B cells from cord blood	blood
14	chr11:9589800-9593000	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr11:9589800-9594200	Enhancers	Primary B cells from peripheral blood	blood
16	chr11:9590000-9594200	Weak transcription	Fetal Brain Male	brain
17	chr11:9590000-9594200	Weak transcription	Ovary	ovary
18	chr11:9590600-9593000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr11:9590600-9594200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr11:9590600-9594200	Weak transcription	Brain Anterior Caudate	brain
21	chr11:9590800-9592200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:9590800-9592400	Enhancers	Liver	Liver
23	chr11:9590800-9593800	Enhancers	Fetal Muscle Trunk	muscle
24	chr11:9591000-9592000	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr11:9591000-9593200	Enhancers	Duodenum Mucosa	Duodenum
26	chr11:9591000-9593400	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr11:9591000-9593400	Enhancers	K562	blood
28	chr11:9591000-9593800	Weak transcription	Brain Hippocampus Middle	brain
29	chr11:9591000-9594000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:9591000-9594000	Weak transcription	Fetal Brain Female	brain
31	chr11:9591000-9594000	Enhancers	Placenta Amnion	Placenta Amnion
32	chr11:9591000-9594200	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr11:9591000-9594400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:9591200-9592200	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr11:9591200-9593400	Enhancers	Muscle Satellite Cultured Cells	--
36	chr11:9591200-9593400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr11:9591200-9593800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr11:9591200-9593800	Weak transcription	Brain Germinal Matrix	brain
39	chr11:9591200-9593800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr11:9591200-9593800	Enhancers	Fetal Muscle Leg	muscle
41	chr11:9591200-9593800	Weak transcription	Fetal Thymus	thymus
42	chr11:9591200-9594000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr11:9591200-9594000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr11:9591200-9594000	Weak transcription	Adipose Nuclei	Adipose
45	chr11:9591200-9594200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr11:9591200-9594200	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr11:9591200-9594400	Weak transcription	Pancreas	Pancrea
48	chr11:9591400-9592000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr11:9591400-9592200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr11:9591400-9592600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links