Variant report

Variant	rs35981803
Chromosome Location	chr12:118567709-118567710
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17512051	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17878718	0.85[EUR][1000 genomes]
rs34010869	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35800761	0.84[EUR][1000 genomes]
rs68164019	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs71452635	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs71452636	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7300114	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053785	chr12:118490955-118874194	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118542400-118569400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr12:118542600-118569400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr12:118542600-118572800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr12:118542600-118573400	Weak transcription	Primary T cells from cord blood	blood
5	chr12:118545400-118569600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr12:118546400-118569400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr12:118552800-118572800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr12:118552800-118573400	Weak transcription	Aorta	Aorta
9	chr12:118553000-118573000	Weak transcription	Fetal Brain Female	brain
10	chr12:118558800-118572800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr12:118559000-118569200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr12:118559200-118569400	Weak transcription	Adipose Nuclei	Adipose
13	chr12:118559200-118569400	Weak transcription	Dnd41	blood
14	chr12:118559200-118569600	Weak transcription	GM12878-XiMat	blood
15	chr12:118559200-118569800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr12:118559200-118570000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr12:118559200-118572600	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr12:118559200-118572600	Weak transcription	NHEK	skin
19	chr12:118559200-118572800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr12:118559200-118573000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr12:118559200-118573000	Weak transcription	Fetal Kidney	kidney
22	chr12:118559200-118573400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr12:118559200-118573400	Weak transcription	Fetal Intestine Small	intestine
24	chr12:118559400-118569200	Weak transcription	Brain Substantia Nigra	brain
25	chr12:118559400-118569200	Weak transcription	A549	lung
26	chr12:118559400-118569400	Weak transcription	Brain Anterior Caudate	brain
27	chr12:118559400-118569400	Weak transcription	Brain Cingulate Gyrus	brain
28	chr12:118559400-118569800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr12:118559400-118572600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr12:118559400-118572800	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr12:118560800-118572800	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr12:118561600-118572800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr12:118561600-118573000	Weak transcription	Primary hematopoietic stem cells	blood
34	chr12:118562800-118569400	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr12:118563200-118573400	Weak transcription	Lung	lung
36	chr12:118564200-118569400	Weak transcription	Fetal Muscle Leg	muscle
37	chr12:118564200-118572800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr12:118564400-118569400	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr12:118564400-118569400	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr12:118564400-118573200	Weak transcription	Fetal Stomach	stomach
41	chr12:118564600-118569200	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr12:118564600-118569200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr12:118565000-118569600	Weak transcription	Ovary	ovary
44	chr12:118565000-118572800	Weak transcription	Gastric	stomach
45	chr12:118565200-118569800	Weak transcription	Duodenum Mucosa	Duodenum
46	chr12:118565200-118572800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr12:118565400-118569400	Weak transcription	Liver	Liver
48	chr12:118565400-118569400	Weak transcription	Pancreas	Pancrea
49	chr12:118565600-118569600	Weak transcription	Stomach Mucosa	stomach
50	chr12:118566200-118568200	Weak transcription	HepG2	liver

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