Variant report

Variant	rs35982175
Chromosome Location	chr4:57841365-57841366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:57771524..57779492-chr4:57841270..57849741,26	K562	blood:
2	chr4:57822641..57828782-chr4:57838494..57846737,10	K562	blood:
3	chr4:57826815..57829812-chr4:57841300..57844628,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000084093	Chromatin interaction
ENSG00000269949	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1277284	0.83[ASN][1000 genomes]
rs1713997	0.86[ASN][1000 genomes]
rs1718839	0.86[EUR][1000 genomes]
rs1718882	0.81[ASN][1000 genomes]
rs1718886	0.83[ASN][1000 genomes]
rs2293175	0.80[ASN][1000 genomes]
rs2948348	0.83[ASN][1000 genomes]
rs34576794	0.87[EUR][1000 genomes]
rs7668814	0.82[ASN][1000 genomes]
rs781665	0.86[EUR][1000 genomes]
rs781666	0.87[EUR][1000 genomes]
rs781668	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv1012287	chr4:57652778-57853485	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1012125	chr4:57668229-57865803	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57793600-57842000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:57793600-57842000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:57826600-57841400	Strong transcription	Fetal Intestine Large	intestine
4	chr4:57827000-57843200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr4:57827200-57841400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr4:57835400-57842000	Strong transcription	Fetal Stomach	stomach
7	chr4:57837000-57842200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:57839400-57842000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr4:57839800-57842400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:57840000-57841600	Weak transcription	Brain Germinal Matrix	brain
11	chr4:57840000-57842000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr4:57840000-57842000	Weak transcription	Brain Substantia Nigra	brain
13	chr4:57840000-57842000	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr4:57840000-57842000	Weak transcription	HSMMtube	muscle
15	chr4:57840000-57842400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:57840000-57842400	Weak transcription	Aorta	Aorta
17	chr4:57840200-57841400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr4:57840200-57841400	Weak transcription	NHLF	lung
19	chr4:57840200-57842000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr4:57840200-57842000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr4:57840200-57842000	Weak transcription	Brain Hippocampus Middle	brain
22	chr4:57840200-57842000	Weak transcription	Fetal Heart	heart
23	chr4:57840200-57842000	Weak transcription	Fetal Kidney	kidney
24	chr4:57840200-57842000	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr4:57840200-57842000	Weak transcription	A549	lung
26	chr4:57840200-57842000	Weak transcription	HSMM	muscle
27	chr4:57840200-57842000	Weak transcription	NHDF-Ad	bronchial
28	chr4:57840200-57842000	Weak transcription	Osteobl	bone
29	chr4:57840400-57841400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr4:57840400-57841400	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr4:57840400-57841400	Enhancers	HepG2	liver
32	chr4:57840400-57841600	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr4:57840400-57841800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr4:57840400-57842000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr4:57840400-57842000	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr4:57840400-57842000	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr4:57840400-57842200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr4:57840400-57842200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
39	chr4:57840400-57842800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
40	chr4:57840600-57841400	Weak transcription	Stomach Smooth Muscle	stomach
41	chr4:57840600-57841600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr4:57840600-57841600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr4:57840600-57841800	Enhancers	Gastric	stomach
44	chr4:57840600-57842000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr4:57840600-57842000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr4:57840600-57842000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr4:57840600-57842000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr4:57840600-57842000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
49	chr4:57840600-57842000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr4:57840600-57842000	Weak transcription	Brain Inferior Temporal Lobe	brain

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