The 2.0 version of rSNPBase

Variant report

Variant rs35986830
Chromosome Location chr20:16553646-16553647
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:16551800-16555000 Active TSS Colonic Mucosa Colon
2 chr20:16552200-16554200 Active TSS Rectal Mucosa Donor 31 rectum
3 chr20:16552200-16556600 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
4 chr20:16552400-16555000 Active TSS Ovary ovary
5 chr20:16552800-16554200 Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr20:16552800-16554200 Active TSS HMEC breast
7 chr20:16552800-16555000 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
8 chr20:16552800-16555000 Active TSS K562 blood
9 chr20:16552800-16555200 Active TSS Rectal Smooth Muscle rectum
10 chr20:16552800-16556400 Active TSS iPS-20b Cell Line embryonic stem cell
11 chr20:16552800-16556400 Active TSS Pancreatic Islets Pancreatic Islet
12 chr20:16553000-16553800 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
13 chr20:16553000-16553800 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
14 chr20:16553000-16553800 Flanking Active TSS Primary T helper cells fromperipheralblood blood
15 chr20:16553000-16553800 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
16 chr20:16553000-16553800 Flanking Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
17 chr20:16553000-16553800 Flanking Active TSS Stomach Smooth Muscle stomach
18 chr20:16553000-16553800 Flanking Active TSS Osteobl bone
19 chr20:16553000-16554200 Active TSS Fetal Intestine Small intestine
20 chr20:16553000-16554200 Active TSS Right Ventricle heart
21 chr20:16553000-16554200 Active TSS NHEK skin
22 chr20:16553000-16554400 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
23 chr20:16553000-16554400 Active TSS Fetal Intestine Large intestine
24 chr20:16553000-16554400 Active TSS Right Atrium heart
25 chr20:16553000-16554400 Active TSS Hela-S3 cervix
26 chr20:16553000-16554400 Active TSS NHDF-Ad bronchial
27 chr20:16553000-16554600 Active TSS ES-WA7 Cell Line embryonic stem cell
28 chr20:16553000-16554600 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
29 chr20:16553000-16554800 Active TSS Psoas Muscle Psoas
30 chr20:16553000-16556400 Active TSS HUES6 Cell Line embryonic stem cell
31 chr20:16553000-16556400 Active TSS HUES64 Cell Line embryonic stem cell
32 chr20:16553000-16557200 Active TSS ES-I3 Cell Line embryonic stem cell
33 chr20:16553200-16553800 Flanking Active TSS Primary T helper memory cells from peripheral blood 2 blood
34 chr20:16553200-16553800 Flanking Active TSS Adipose Nuclei Adipose
35 chr20:16553200-16553800 Flanking Active TSS Liver Liver
36 chr20:16553200-16553800 Flanking Active TSS Fetal Adrenal Gland Adrenal Gland
37 chr20:16553200-16553800 Flanking Active TSS HUVEC blood vessel
38 chr20:16553200-16554200 Active TSS IMR90 fetal lung fibroblasts Cell Line lung
39 chr20:16553200-16554200 Active TSS Stomach Mucosa stomach
40 chr20:16553200-16554400 Active TSS Fetal Kidney kidney
41 chr20:16553200-16554600 Active TSS HSMMtube muscle
42 chr20:16553200-16554600 Active TSS NHLF lung
43 chr20:16553200-16554800 Active TSS Breast Myoepithelial Primary Cells Breast
44 chr20:16553200-16554800 Flanking Active TSS Monocytes-CD14+_RO01746 blood
45 chr20:16553200-16555000 Active TSS Brain Substantia Nigra brain
46 chr20:16553200-16555000 Active TSS GM12878-XiMat blood
47 chr20:16553200-16555400 Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
48 chr20:16553200-16555800 Active TSS HSMM muscle
49 chr20:16553200-16556000 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
50 chr20:16553200-16556200 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin

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Last update: Aug 31, 2015