Variant report

Variant	rs35988980
Chromosome Location	chr3:54383794-54383795
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1868509	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4974365	0.82[AMR][1000 genomes]
rs4974366	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9875862	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv817210	chr3:54365684-54511164	Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54378800-54389000	Weak transcription	Psoas Muscle	Psoas
2	chr3:54380000-54391200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:54380200-54387200	Weak transcription	Ovary	ovary
4	chr3:54382000-54384800	Enhancers	Hela-S3	cervix
5	chr3:54382200-54384200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:54382200-54384800	Enhancers	Fetal Lung	lung
7	chr3:54382800-54387200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:54383000-54384200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr3:54383000-54384600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:54383200-54384000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr3:54383200-54384000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:54383200-54384000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr3:54383200-54384000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr3:54383200-54384000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:54383200-54384000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr3:54383200-54384200	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr3:54383200-54384800	Enhancers	K562	blood
18	chr3:54383400-54383800	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr3:54383400-54384000	Enhancers	Fetal Brain Female	brain
20	chr3:54383400-54384200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr3:54383400-54387400	Weak transcription	Left Ventricle	heart
22	chr3:54383400-54387600	Weak transcription	Right Atrium	heart
23	chr3:54383400-54392600	Weak transcription	Right Ventricle	heart
24	chr3:54383600-54384000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr3:54383600-54384000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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