Variant report

Variant	rs35990797
Chromosome Location	chr7:127743822-127743823
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:127735968..127738181-chr7:127743649..127746341,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12706824	0.82[AMR][1000 genomes]
rs13232846	0.82[AMR][1000 genomes]
rs13238717	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35081291	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35584770	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127734400-127744000	Weak transcription	A549	lung
2	chr7:127734400-127748200	Weak transcription	Dnd41	blood
3	chr7:127743400-127744000	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:127743400-127744000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr7:127743400-127744000	Flanking Active TSS	Right Ventricle	heart
6	chr7:127743400-127744200	Flanking Active TSS	Primary B cells from peripheral blood	blood
7	chr7:127743400-127744400	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:127743400-127744600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:127743400-127744800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
10	chr7:127743400-127744800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:127743400-127744800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr7:127743400-127745000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
13	chr7:127743400-127745000	Active TSS	Primary T cells from cord blood	blood
14	chr7:127743600-127744000	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr7:127743600-127744000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
16	chr7:127743600-127744000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
17	chr7:127743600-127744000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr7:127743600-127744000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
19	chr7:127743600-127744000	Bivalent/Poised TSS	Brain Germinal Matrix	brain
20	chr7:127743600-127744000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
21	chr7:127743600-127744000	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
22	chr7:127743600-127744000	Flanking Active TSS	Esophagus	oesophagus
23	chr7:127743600-127744000	Flanking Bivalent TSS/Enh	Placenta	Placenta
24	chr7:127743600-127744000	Flanking Active TSS	Lung	lung
25	chr7:127743600-127744000	Flanking Active TSS	Ovary	ovary
26	chr7:127743600-127744000	Flanking Active TSS	Pancreas	Pancrea
27	chr7:127743600-127744200	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
28	chr7:127743600-127744200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
29	chr7:127743600-127744200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
30	chr7:127743600-127744200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
31	chr7:127743600-127744200	Bivalent/Poised TSS	Psoas Muscle	Psoas
32	chr7:127743600-127744200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
33	chr7:127743600-127744200	Flanking Active TSS	NHDF-Ad	bronchial
34	chr7:127743600-127744400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
35	chr7:127743600-127744400	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
36	chr7:127743600-127744400	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
37	chr7:127743600-127744400	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
38	chr7:127743600-127744400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
39	chr7:127743600-127744400	Active TSS	Pancreatic Islets	Pancreatic Islet
40	chr7:127743600-127744400	Flanking Bivalent TSS/Enh	Left Ventricle	heart
41	chr7:127743600-127744400	Bivalent/Poised TSS	NHLF	lung
42	chr7:127743600-127744600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr7:127743600-127744600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr7:127743600-127744600	Active TSS	Brain Anterior Caudate	brain
45	chr7:127743600-127744600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
46	chr7:127743600-127744600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
47	chr7:127743600-127744600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
48	chr7:127743600-127744600	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
49	chr7:127743600-127744600	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
50	chr7:127743600-127744600	Flanking Bivalent TSS/Enh	Thymus	Thymus

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