Variant report

Variant	rs35991329
Chromosome Location	chr11:74980677-74980678
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:74970782..74974993-chr11:74977926..74981533,5	MCF-7	breast:
2	chr11:74970975..74974100-chr11:74980576..74984657,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254429	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs34207030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34462044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34522100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35089648	1.00[AFR][1000 genomes]
rs35316816	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35753294	1.00[AMR][1000 genomes]
rs56156833	1.00[AMR][1000 genomes]
rs58745525	1.00[AMR][1000 genomes]
rs58911637	1.00[AMR][1000 genomes]
rs73494855	1.00[AMR][1000 genomes]
rs73494864	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049887	chr11:74937977-75040438	Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1036292	chr11:74937977-75059496	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
3	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
4	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74970800-74988200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:74972200-74984600	Weak transcription	Thymus	Thymus
3	chr11:74972400-75004400	Weak transcription	Fetal Brain Male	brain
4	chr11:74972600-74984600	Weak transcription	Fetal Thymus	thymus
5	chr11:74972800-74987200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr11:74972800-74991400	Weak transcription	Right Atrium	heart
7	chr11:74973200-74980800	Weak transcription	HSMMtube	muscle
8	chr11:74974000-74985000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr11:74975000-74980800	Strong transcription	Fetal Brain Female	brain
10	chr11:74975000-74983600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:74975000-74986800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr11:74975000-74987600	Weak transcription	Small Intestine	intestine
13	chr11:74975200-74986600	Strong transcription	Fetal Intestine Small	intestine
14	chr11:74975200-74988200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr11:74975200-74988400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr11:74975200-74991200	Strong transcription	Fetal Stomach	stomach
17	chr11:74975600-74982000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr11:74975600-74982800	Strong transcription	Primary T cells from cord blood	blood
19	chr11:74975600-74984200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr11:74975600-74985400	Strong transcription	Fetal Intestine Large	intestine
21	chr11:74975600-74987400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:74975600-74988800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:74975600-74991400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr11:74975600-74999000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:74975800-74982000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr11:74975800-74982000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr11:74975800-74982000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr11:74975800-74983400	Weak transcription	HUVEC	blood vessel
29	chr11:74975800-74991200	Strong transcription	HUES6 Cell Line	embryonic stem cell
30	chr11:74976000-74982000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr11:74976000-74982200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr11:74976000-74982400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr11:74976200-74983400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr11:74976200-74985800	Strong transcription	Spleen	Spleen
35	chr11:74976200-74991800	Strong transcription	Lung	lung
36	chr11:74976400-74984600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr11:74976400-74990200	Strong transcription	Fetal Muscle Trunk	muscle
38	chr11:74976600-74981200	Strong transcription	Gastric	stomach
39	chr11:74976600-74981200	Strong transcription	Ovary	ovary
40	chr11:74976600-74982600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
41	chr11:74976600-74994200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr11:74976800-74981000	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr11:74976800-74981400	Strong transcription	Duodenum Mucosa	Duodenum
44	chr11:74976800-74981400	Strong transcription	Sigmoid Colon	Sigmoid Colon
45	chr11:74976800-74985400	Strong transcription	Liver	Liver
46	chr11:74976800-74986800	Strong transcription	Colon Smooth Muscle	Colon
47	chr11:74976800-74987200	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr11:74977000-74985400	Strong transcription	Brain Anterior Caudate	brain
49	chr11:74977200-74983600	Strong transcription	Primary hematopoietic stem cells	blood
50	chr11:74977200-74985200	Weak transcription	Primary B cells from cord blood	blood

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