Variant report

Variant	rs35992002
Chromosome Location	chr3:133689660-133689661
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133687273..133690612-chr3:133691267..133693178,3	MCF-7	breast:
2	chr3:133689098..133691983-chr3:133695476..133697477,2	K562	blood:
3	chr3:133688128..133691070-chr3:133695886..133697477,3	K562	blood:
4	chr3:133688128..133690798-chr3:133696100..133697808,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13063838	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34627789	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34652214	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35819071	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60721435	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73861289	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73861290	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527655	chr3:133687864-133696285	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133663800-133694800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr3:133664000-133705400	Weak transcription	Fetal Intestine Small	intestine
3	chr3:133664800-133713000	Weak transcription	Gastric	stomach
4	chr3:133675400-133698800	Weak transcription	Right Ventricle	heart
5	chr3:133682800-133699000	Weak transcription	Stomach Mucosa	stomach
6	chr3:133687400-133690600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:133687600-133696600	Weak transcription	Left Ventricle	heart
8	chr3:133687600-133697200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr3:133687800-133689800	Weak transcription	Adipose Nuclei	Adipose
10	chr3:133688000-133710800	Weak transcription	Fetal Lung	lung
11	chr3:133688200-133692000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:133688800-133689800	Weak transcription	Lung	lung
13	chr3:133688800-133690200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr3:133689200-133689800	Weak transcription	Esophagus	oesophagus
15	chr3:133689400-133689800	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr3:133689400-133689800	Enhancers	Spleen	Spleen
17	chr3:133689400-133690200	Enhancers	Right Atrium	heart
18	chr3:133689400-133690400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr3:133689400-133690600	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr3:133689600-133690200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr3:133689600-133690200	Enhancers	Ovary	ovary
22	chr3:133689600-133690400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr3:133689600-133691800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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