Variant report

Variant	rs35993428
Chromosome Location	chr1:48124575-48124576
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17103268	1.00[AMR][1000 genomes]
rs56758748	1.00[AMR][1000 genomes]
rs58133026	1.00[AMR][1000 genomes]
rs60658472	1.00[AMR][1000 genomes]
rs61589643	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6666270	1.00[ASN][1000 genomes]
rs6668966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7549942	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829760	chr1:48111126-48308188	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv871257	chr1:48111699-48334490	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:48122400-48126800	Weak transcription	Psoas Muscle	Psoas
2	chr1:48122800-48124600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr1:48123600-48125200	Enhancers	Aorta	Aorta
4	chr1:48123600-48128200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:48123800-48124600	Enhancers	Spleen	Spleen
6	chr1:48123800-48125600	Enhancers	Fetal Intestine Small	intestine
7	chr1:48124000-48125000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:48124000-48125000	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
9	chr1:48124000-48125600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr1:48124000-48127200	Enhancers	Brain Germinal Matrix	brain
11	chr1:48124200-48124600	Weak transcription	Brain Hippocampus Middle	brain
12	chr1:48124200-48128400	Weak transcription	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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