Variant report

Variant	rs35994757
Chromosome Location	chr7:100951919-100951920
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:100951106..100952099-chr8:37552941..37553786,2	HCT-116	colon:
2	chr7:100859934..100861544-chr7:100949902..100952091,2	K562	blood:
3	chr7:100950840..100954191-chr7:100963498..100966604,5	MCF-7	breast:
4	chr7:100941733..100944347-chr7:100950677..100953123,2	MCF-7	breast:
5	chr7:100951652..100953398-chr7:100953486..100955854,2	K562	blood:

Variant related genes	Relation type
ENSG00000128581	Chromatin interaction
ENSG00000232301	Chromatin interaction
ENSG00000106400	Chromatin interaction
ENSG00000183779	Chromatin interaction
ENSG00000106397	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12113715	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12666399	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13228710	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2410814	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2410816	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2410819	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28369106	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4729681	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4729685	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4729687	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6465796	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6946358	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7799285	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9690695	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9692596	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv1030604	chr7:100717732-101223465	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	esv2422376	chr7:100743485-101016471	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv464651	chr7:100792810-100971604	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	nsv607974	chr7:100792810-100971604	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	nsv429788	chr7:100799565-101178565	Weak transcription Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
7	esv2752134	chr7:100800131-101141867	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv831076	chr7:100828847-101011674	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
9	esv2422326	chr7:100833449-101000131	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
10	nsv607978	chr7:100861213-100971604	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
11	nsv831077	chr7:100874209-101083930	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
12	nsv1023393	chr7:100904333-101102046	Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
13	esv2752135	chr7:100932330-101135565	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
14	esv2752136	chr7:100932330-101143259	Genic enhancers Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
15	nsv1017098	chr7:100935631-101117541	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
16	nsv539042	chr7:100935631-101117541	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
17	esv2752137	chr7:100938008-101135398	ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:100950600-100953000	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr7:100950800-100952800	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr7:100950800-100952800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:100950800-100953200	Active TSS	H9 Cell Line	embryonic stem cell
5	chr7:100951000-100952000	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr7:100951000-100952000	Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr7:100951000-100952200	Active TSS	HMEC	breast
8	chr7:100951000-100952200	Active TSS	NHEK	skin
9	chr7:100951000-100952800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr7:100951000-100952800	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr7:100951000-100952800	Active TSS	iPS-18 Cell Line	embryonic stem cell
12	chr7:100951000-100952800	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr7:100951000-100952800	Active TSS	Hela-S3	cervix
14	chr7:100951000-100953000	Active TSS	H1 Cell Line	embryonic stem cell
15	chr7:100951000-100953200	Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr7:100951200-100952000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr7:100951200-100952000	Active TSS	Pancreas	Pancrea
18	chr7:100951200-100952200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr7:100951200-100952200	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr7:100951200-100952200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr7:100951200-100952200	Active TSS	Muscle Satellite Cultured Cells	--
22	chr7:100951200-100952200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
23	chr7:100951200-100952200	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
24	chr7:100951200-100952200	Active TSS	Gastric	stomach
25	chr7:100951200-100952200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
26	chr7:100951200-100952200	Active TSS	Rectal Mucosa Donor 31	rectum
27	chr7:100951200-100952400	Active TSS	Pancreatic Islets	Pancreatic Islet
28	chr7:100951200-100952400	Active TSS	A549	lung
29	chr7:100951200-100952600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
30	chr7:100951200-100952600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr7:100951200-100952600	Active TSS	Duodenum Mucosa	Duodenum
32	chr7:100951200-100952600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
33	chr7:100951200-100952600	Active TSS	K562	blood
34	chr7:100951200-100952800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr7:100951200-100953000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr7:100951200-100953200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr7:100951400-100952000	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr7:100951400-100952000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr7:100951400-100952000	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
40	chr7:100951400-100952000	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
41	chr7:100951400-100952000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
42	chr7:100951400-100952000	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
43	chr7:100951400-100952000	Flanking Active TSS	Adipose Nuclei	Adipose
44	chr7:100951400-100952000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
45	chr7:100951400-100952000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
46	chr7:100951400-100952000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
47	chr7:100951400-100952000	Bivalent/Poised TSS	Left Ventricle	heart
48	chr7:100951400-100952000	Active TSS	Ovary	ovary
49	chr7:100951400-100952000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
50	chr7:100951400-100952000	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links