Variant report

Variant	rs35996477
Chromosome Location	chr3:70010930-70010931
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:70009370..70011252-chr3:70011508..70014285,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1021413	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11718882	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12639523	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1491687	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1491688	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1491689	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17727959	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1844877	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1907646	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1907647	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2131026	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2172211	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2874270	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34790356	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35180789	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35416604	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36125122	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3772111	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3821364	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3967688	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4635708	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4855331	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4855453	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4855454	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4855455	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4855456	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55842620	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56351003	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs576	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6549254	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6549255	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6549256	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6549257	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6549258	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6549259	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6549260	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6771970	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs704246	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73119519	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7429562	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7431913	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs902711	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs902712	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs923702	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9839734	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533396	chr3:69964029-70538306	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69975800-70013800	Weak transcription	Psoas Muscle	Psoas
2	chr3:69978600-70014000	Weak transcription	Esophagus	oesophagus
3	chr3:69981800-70016800	Weak transcription	K562	blood
4	chr3:69990800-70015600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:69993600-70015600	Weak transcription	Colonic Mucosa	Colon
6	chr3:69994400-70016200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:69998000-70016000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr3:69998200-70017600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr3:69998400-70011200	Weak transcription	Brain Hippocampus Middle	brain
10	chr3:69998400-70016000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr3:69998800-70014200	Weak transcription	A549	lung
12	chr3:70001600-70017200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:70003800-70016600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr3:70004600-70017000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr3:70005400-70017000	Weak transcription	Hela-S3	cervix
16	chr3:70006000-70017400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr3:70006800-70012600	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr3:70007200-70017400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr3:70007600-70015400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr3:70007600-70016200	Weak transcription	Spleen	Spleen
21	chr3:70009000-70016000	Weak transcription	Gastric	stomach
22	chr3:70009000-70021200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr3:70009200-70014000	Weak transcription	Lung	lung
24	chr3:70009200-70014000	Weak transcription	NHLF	lung
25	chr3:70009200-70015800	Weak transcription	Brain Angular Gyrus	brain
26	chr3:70009200-70015800	Weak transcription	HSMM	muscle
27	chr3:70009400-70011200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:70009400-70015400	Weak transcription	Fetal Lung	lung
29	chr3:70009400-70015800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr3:70009600-70013800	Weak transcription	Fetal Stomach	stomach
31	chr3:70009600-70015800	Weak transcription	Brain Substantia Nigra	brain
32	chr3:70009600-70015800	Weak transcription	Right Ventricle	heart
33	chr3:70009600-70016000	Weak transcription	Aorta	Aorta
34	chr3:70009600-70018800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr3:70009800-70014000	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr3:70009800-70015600	Weak transcription	Brain Cingulate Gyrus	brain
37	chr3:70009800-70015800	Weak transcription	Stomach Mucosa	stomach
38	chr3:70009800-70017200	Weak transcription	Pancreas	Pancrea
39	chr3:70009800-70018800	Weak transcription	Colon Smooth Muscle	Colon
40	chr3:70010000-70011200	Weak transcription	Fetal Heart	heart
41	chr3:70010000-70013600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr3:70010000-70013800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr3:70010000-70016000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr3:70010000-70016600	Weak transcription	Brain Anterior Caudate	brain
45	chr3:70010200-70011000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr3:70010200-70011400	Weak transcription	Left Ventricle	heart
47	chr3:70010200-70012000	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr3:70010200-70012600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr3:70010200-70012600	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr3:70010200-70013600	Weak transcription	Stomach Smooth Muscle	stomach

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