Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12434126	0.83[AMR][1000 genomes]
rs12434144	0.84[AMR][1000 genomes]
rs12435532	0.82[AMR][1000 genomes]
rs12436125	0.80[AMR][1000 genomes]
rs12879869	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12882679	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12896672	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12897000	0.83[AMR][1000 genomes]
rs2167151	0.82[AMR][1000 genomes]
rs2196442	0.80[AMR][1000 genomes]
rs2196445	0.82[AMR][1000 genomes]
rs2197991	0.83[AMR][1000 genomes]
rs2217888	0.82[AMR][1000 genomes]
rs2370976	0.83[AMR][1000 genomes]
rs2370977	0.81[AMR][1000 genomes]
rs2370978	0.81[AMR][1000 genomes]
rs2370979	0.83[AMR][1000 genomes]
rs28889302	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35236866	0.83[AMR][1000 genomes]
rs35310631	0.83[AMR][1000 genomes]
rs35441767	0.83[AMR][1000 genomes]
rs35861800	0.82[AMR][1000 genomes]
rs4899743	0.83[AMR][1000 genomes]
rs4903853	0.83[AMR][1000 genomes]
rs4903856	0.80[AMR][1000 genomes]
rs61993111	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61993112	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61993119	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7150974	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv530072	chr14:79769657-79928269	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv902111	chr14:79807197-79890677	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3377779	chr14:79841649-79843597	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
6	esv3371621	chr14:79842099-79843197	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79836600-79843000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr14:79839400-79844600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr14:79839400-79846000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr14:79840200-79846000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr14:79841000-79844200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr14:79842000-79844200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr14:79842000-79844200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr14:79842000-79844400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr14:79842200-79845600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr14:79842600-79844200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr14:79842600-79844200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr14:79842600-79846200	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr14:79842800-79843000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr14:79842800-79843600	Enhancers	Colon Smooth Muscle	Colon

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