Variant report

Variant	rs36015827
Chromosome Location	chr7:99392804-99392805
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28988571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28988582	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs45585936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4986907	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1827709	chr7:99353500-99440051	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99388600-99393200	Enhancers	Fetal Intestine Small	intestine
2	chr7:99391600-99393000	Enhancers	Pancreas	Pancrea
3	chr7:99392000-99393000	Flanking Active TSS	Liver	Liver
4	chr7:99392000-99393200	Enhancers	Fetal Intestine Large	intestine
5	chr7:99392000-99394200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:99392200-99393200	Enhancers	Duodenum Mucosa	Duodenum
7	chr7:99392200-99393400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr7:99392400-99393200	Enhancers	Osteobl	bone
9	chr7:99392600-99393000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:99392600-99393000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr7:99392600-99393000	Flanking Active TSS	A549	lung
12	chr7:99392600-99393000	Enhancers	NH-A	brain
13	chr7:99392600-99393200	Flanking Active TSS	HepG2	liver
14	chr7:99392600-99393200	Enhancers	HSMM	muscle
15	chr7:99392600-99393200	Enhancers	HSMMtube	muscle
16	chr7:99392600-99393200	Enhancers	K562	blood
17	chr7:99392600-99393200	Enhancers	NHDF-Ad	bronchial
18	chr7:99392600-99393400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr7:99392800-99393200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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