Variant report

Variant	rs36016599
Chromosome Location	chr14:105155316-105155317
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr14:105154961-105155834	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr14:105154976-105155384	A549	lung:	n/a	n/a
3	TFAP2C	chr14:105153654-105155831	Hela-S3	cervix:	n/a	chr14:105155796-105155811
4	ELF1	chr14:105153910-105155542	A549	lung:	n/a	chr14:105154603-105154614 chr14:105154437-105154449 chr14:105153947-105153959 chr14:105154604-105154613
5	RFX5	chr14:105155031-105155749	Hela-S3	cervix:	n/a	n/a
6	REST	chr14:105153611-105155717	A549	lung:	n/a	chr14:105154619-105154632
7	TCF7L2	chr14:105153867-105155370	Hela-S3	cervix:	n/a	chr14:105154280-105154289
8	CREB1	chr14:105154915-105155414	A549	lung:	n/a	n/a
9	CEBPB	chr14:105155057-105155654	MCF-7	breast:	n/a	n/a
10	GTF2F1	chr14:105154167-105155621	Hela-S3	cervix:	n/a	n/a
11	POLR2A	chr14:105155194-105155356	HepG2	liver:	n/a	n/a
12	MAX	chr14:105153023-105157145	MCF-7	breast:	n/a	chr14:105154279-105154288 chr14:105155820-105155830 chr14:105155886-105155895 chr14:105153647-105153657 chr14:105155886-105155895 chr14:105155886-105155896 chr14:105155409-105155419 chr14:105156192-105156202 chr14:105155886-105155895 chr14:105156133-105156143 chr14:105156775-105156784
13	CEBPD	chr14:105155209-105155482	HepG2	liver:	n/a	n/a
14	POLR2A	chr14:105154926-105156199	HCT-116	colon:	n/a	n/a
15	POLR2A	chr14:105154993-105155743	HepG2	liver:	n/a	n/a
16	ELF1	chr14:105155200-105155813	GM12878	blood:	n/a	chr14:105155675-105155687
17	MYBL2	chr14:105154005-105155396	HepG2	liver:	n/a	n/a
18	ETS1	chr14:105154852-105155491	A549	lung:	n/a	n/a
19	TCF12	chr14:105152998-105157230	A549	lung:	n/a	chr14:105153700-105153710 chr14:105155736-105155746 chr14:105153973-105153980 chr14:105154616-105154626 chr14:105154166-105154176 chr14:105154722-105154729 chr14:105157115-105157125 chr14:105156520-105156530
20	CHD2	chr14:105154970-105155862	Hela-S3	cervix:	n/a	n/a
21	JUND	chr14:105154915-105156010	A549	lung:	n/a	chr14:105155905-105155914 chr14:105155127-105155138
22	BCL3	chr14:105153554-105155826	A549	lung:	n/a	chr14:105153701-105153714 chr14:105155536-105155549 chr14:105154690-105154699 chr14:105155424-105155437 chr14:105155332-105155341 chr14:105154612-105154625
23	CEBPB	chr14:105155148-105155519	IMR90	lung:	n/a	n/a
24	CEBPB	chr14:105154044-105155683	Hela-S3	cervix:	n/a	n/a
25	MYC	chr14:105153810-105156712	Hela-S3	cervix:	n/a	chr14:105154279-105154288 chr14:105155820-105155830 chr14:105155886-105155895 chr14:105155886-105155895 chr14:105155886-105155896 chr14:105155409-105155419 chr14:105156192-105156202 chr14:105155886-105155895 chr14:105156133-105156143
26	POLR2A	chr14:105153911-105157647	Hela-S3	cervix:	n/a	n/a
27	ELK1	chr14:105154122-105155390	Hela-S3	cervix:	n/a	n/a
28	ZKSCAN1	chr14:105155063-105155782	Hela-S3	cervix:	n/a	n/a
29	MAX	chr14:105153621-105156146	A549	lung:	n/a	chr14:105154279-105154288 chr14:105155820-105155830 chr14:105155886-105155895 chr14:105153647-105153657 chr14:105155886-105155895 chr14:105155886-105155896 chr14:105155409-105155419 chr14:105155886-105155895 chr14:105156133-105156143
30	POLR2A	chr14:105154020-105155851	U87	brain:	n/a	n/a
31	POLR2A	chr14:105155284-105156093	H1-hESC	embryonic stem cell:	n/a	n/a
32	NFYA	chr14:105155113-105155480	Hela-S3	cervix:	n/a	n/a
33	TAF1	chr14:105155315-105156453	ECC-1	luminal epithelium:	n/a	n/a
34	MAZ	chr14:105153848-105156419	Hela-S3	cervix:	n/a	chr14:105154279-105154288 chr14:105155820-105155830 chr14:105155886-105155895 chr14:105155886-105155895 chr14:105155886-105155896 chr14:105155409-105155419 chr14:105156192-105156202 chr14:105155886-105155895 chr14:105156133-105156143
35	SIN3A	chr14:105155285-105155666	H1-hESC	embryonic stem cell:	n/a	n/a
36	ELK4	chr14:105154201-105155343	Hela-S3	cervix:	n/a	chr14:105154601-105154612
37	SIN3AK20	chr14:105155079-105155412	A549	lung:	n/a	n/a
38	CEBPB	chr14:105154996-105155632	A549	lung:	n/a	n/a
39	MAX	chr14:105155278-105156043	H1-hESC	embryonic stem cell:	n/a	chr14:105155820-105155830 chr14:105155886-105155895 chr14:105155886-105155895 chr14:105155886-105155896 chr14:105155409-105155419 chr14:105155886-105155895
40	POLR2A	chr14:105155296-105155816	HCT-116	colon:	n/a	n/a
41	ZBTB7A	chr14:105153864-105157138	ECC-1	luminal epithelium:	n/a	chr14:105155256-105155270 chr14:105154036-105154045
42	REST	chr14:105154530-105155318	A549	lung:	n/a	chr14:105154619-105154632
43	CEBPB	chr14:105155136-105155568	H1-hESC	embryonic stem cell:	n/a	n/a
44	TCF12	chr14:105154048-105155692	ECC-1	luminal epithelium:	n/a	chr14:105154616-105154626 chr14:105154166-105154176 chr14:105154722-105154729
45	POLR2A	chr14:105153518-105156496	HepG2	liver:	n/a	n/a
46	POLR2A	chr14:105155278-105155473	Gliobla	brain:	n/a	n/a
47	MAX	chr14:105155039-105155747	A549	lung:	n/a	chr14:105155409-105155419
48	MAX	chr14:105153888-105156144	MCF-7	breast:	n/a	chr14:105154279-105154288 chr14:105155820-105155830 chr14:105155886-105155895 chr14:105155886-105155895 chr14:105155886-105155896 chr14:105155409-105155419 chr14:105155886-105155895 chr14:105156133-105156143
49	TAF1	chr14:105154917-105156250	HepG2	liver:	n/a	n/a
50	TAF1	chr14:105153896-105155794	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:105155136..105157307-chr14:105329558..105331716,2	MCF-7	breast:
2	chr14:105151001..105161366-chr14:105187722..105194013,19	MCF-7	breast:
3	chr14:105152674..105158464-chr14:105195663..105200171,5	MCF-7	breast:
4	chr14:105154946..105155690-chr17:74732999..74733896,2	Hela-S3	cervix:
5	chr14:105154522..105157453-chr17:39675687..39677480,2	MCF-7	breast:
6	chr14:105152506..105155342-chr14:105219707..105222908,4	MCF-7	breast:
7	chr14:105154868..105156884-chr6:99968082..99970602,2	MCF-7	breast:
8	chr14:105129603..105135012-chr14:105153179..105156510,7	MCF-7	breast:
9	chr14:105152009..105155730-chr14:105285811..105290231,3	MCF-7	breast:
10	chr14:105147171..105149206-chr14:105153183..105155434,2	K562	blood:
11	chr14:105141722..105146086-chr14:105153894..105158180,8	K562	blood:
12	chr14:105155143..105157313-chr14:105233532..105235741,2	MCF-7	breast:
13	chr14:105153035..105158169-chr14:105187509..105192673,15	MCF-7	breast:
14	chr14:105154344..105156028-chr14:105189973..105192295,2	K562	blood:

Variant related genes	Relation type
INF2	TF binding region
ENSG00000265291	Chromatin interaction
ENSG00000258701	Chromatin interaction
ENSG00000184990	Chromatin interaction
ENSG00000228439	Chromatin interaction
ENSG00000185100	Chromatin interaction
ENSG00000258430	Chromatin interaction
ENSG00000161547	Chromatin interaction
ENSG00000260792	Chromatin interaction
ENSG00000123552	Chromatin interaction
ENSG00000099814	Chromatin interaction
ENSG00000171346	Chromatin interaction
ENSG00000256050	Chromatin interaction
ENSG00000092931	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56078065	0.89[EUR][1000 genomes]
rs57999984	0.86[ASN][1000 genomes]
rs59578182	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60468249	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:73 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530812	chr14:104775571-105364883	Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv902372	chr14:105011436-105200377	Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv456445	chr14:105023512-105170003	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
4	nsv566047	chr14:105023512-105170003	Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
5	nsv1053591	chr14:105024558-105475931	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
6	nsv542224	chr14:105024558-105475931	Bivalent Enhancer Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
7	esv2830002	chr14:105078251-105348552	Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
8	nsv902378	chr14:105086475-105200377	Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
9	nsv902379	chr14:105086475-105274093	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
10	nsv902380	chr14:105092479-105166002	Genic enhancers Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
11	nsv902381	chr14:105092479-105168414	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
12	nsv902382	chr14:105092479-105185666	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
13	nsv902383	chr14:105092479-105200377	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
14	nsv902384	chr14:105092479-105208567	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
15	nsv902385	chr14:105092479-105215351	Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
16	nsv902386	chr14:105092479-105233095	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
17	nsv902387	chr14:105092479-105274093	Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
18	nsv902388	chr14:105092479-105311249	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
19	nsv902389	chr14:105092479-105366499	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
20	nsv902390	chr14:105100021-105185666	Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
21	esv1828345	chr14:105100787-105803170	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
22	nsv902391	chr14:105105769-105185666	Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
23	nsv902392	chr14:105105769-105274093	Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
24	nsv902393	chr14:105116232-105200377	Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
25	nsv902394	chr14:105116232-105274093	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
26	nsv902395	chr14:105119897-105215351	Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
27	nsv902396	chr14:105119897-105274093	Transcr. at gene 5' and 3' Active TSS Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
28	nsv566048	chr14:105126354-105185666	Transcr. at gene 5' and 3' Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
29	nsv456446	chr14:105126354-105189504	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
30	nsv566049	chr14:105126354-105189504	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
31	nsv456447	chr14:105126354-105200377	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
32	nsv566050	chr14:105126354-105200377	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
33	nsv456448	chr14:105126354-105208567	Strong transcription Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
34	nsv566051	chr14:105126354-105208567	Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
35	nsv470678	chr14:105126354-105246686	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
36	nsv566052	chr14:105126354-105268228	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
37	nsv470677	chr14:105126354-105348552	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
38	nsv542225	chr14:105133688-105803170	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
39	nsv984482	chr14:105134201-105159338	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
40	nsv566053	chr14:105139894-105268228	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
41	nsv902397	chr14:105139894-105268228	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
42	nsv456449	chr14:105146579-105200377	ZNF genes & repeats Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
43	nsv566054	chr14:105146579-105200377	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
44	nsv456450	chr14:105146579-105208567	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
45	nsv566055	chr14:105146579-105208567	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
46	nsv456451	chr14:105146579-105215351	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
47	nsv566056	chr14:105146579-105215351	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
48	nsv902398	chr14:105146579-105215351	Enhancers Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
49	nsv517038	chr14:105146579-105311249	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
50	nsv566057	chr14:105146579-105311249	Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105149800-105156000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:105151000-105155400	Enhancers	Primary B cells from peripheral blood	blood
3	chr14:105151400-105155400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr14:105151400-105155400	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr14:105151400-105155400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr14:105151400-105155400	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr14:105151400-105155400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr14:105152400-105155800	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr14:105152600-105155400	Enhancers	Fetal Thymus	thymus
10	chr14:105152800-105155400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr14:105152800-105156000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr14:105152800-105156000	Enhancers	Primary B cells from cord blood	blood
13	chr14:105152800-105156000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr14:105153000-105155400	Enhancers	Primary T cells fromperipheralblood	blood
15	chr14:105153000-105155400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr14:105153000-105155400	Enhancers	Brain Angular Gyrus	brain
17	chr14:105153000-105155800	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr14:105153000-105156000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr14:105153200-105155400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr14:105153200-105155400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr14:105153200-105155400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr14:105153200-105155400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr14:105153200-105155400	Enhancers	Right Atrium	heart
24	chr14:105153200-105155400	Enhancers	Thymus	Thymus
25	chr14:105153200-105155600	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr14:105153200-105155600	Enhancers	Dnd41	blood
27	chr14:105153400-105155800	Enhancers	Primary T cells from cord blood	blood
28	chr14:105153400-105155800	Flanking Active TSS	Colonic Mucosa	Colon
29	chr14:105153400-105155800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
30	chr14:105153400-105155800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
31	chr14:105153600-105155400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr14:105153600-105155400	Enhancers	HUVEC	blood vessel
33	chr14:105153800-105155400	Enhancers	H1 Cell Line	embryonic stem cell
34	chr14:105153800-105155400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr14:105153800-105155600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
36	chr14:105153800-105155800	Flanking Active TSS	Fetal Intestine Large	intestine
37	chr14:105153800-105155800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
38	chr14:105153800-105156000	Enhancers	Primary hematopoietic stem cells	blood
39	chr14:105154000-105155400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
40	chr14:105154000-105155400	Enhancers	Brain Anterior Caudate	brain
41	chr14:105154000-105155400	Enhancers	Placenta Amnion	Placenta Amnion
42	chr14:105154000-105155600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
43	chr14:105154000-105155600	Flanking Active TSS	HSMM	muscle
44	chr14:105154000-105155600	Flanking Active TSS	NHEK	skin
45	chr14:105154000-105155800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr14:105154000-105155800	Enhancers	Fetal Lung	lung
47	chr14:105154000-105155800	Flanking Active TSS	HMEC	breast
48	chr14:105154000-105156200	Enhancers	Fetal Heart	heart
49	chr14:105154200-105155400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr14:105154200-105155400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links