Variant report

Variant	rs36017943
Chromosome Location	chr11:66673931-66673932
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:66671241..66674201-chr11:66681070..66683415,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12807979	1.00[ASN][1000 genomes]
rs34775878	1.00[ASN][1000 genomes]
rs35287213	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs55981088	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56230646	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61890450	1.00[ASN][1000 genomes]
rs61891302	1.00[ASN][1000 genomes]
rs72926941	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897794	chr11:66579572-66744119	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv555226	chr11:66579572-66845362	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
3	nsv428574	chr11:66619002-66804133	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv832194	chr11:66634462-66805980	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
5	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66651400-66678400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr11:66670000-66674000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:66670000-66675200	Weak transcription	Fetal Intestine Large	intestine
4	chr11:66670600-66675200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:66671200-66677000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr11:66671400-66674000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr11:66671400-66674400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr11:66671400-66674600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:66671400-66674600	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr11:66671400-66674800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:66671400-66675000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:66671600-66674200	Flanking Active TSS	NHEK	skin
13	chr11:66671600-66674400	Enhancers	NH-A	brain
14	chr11:66671600-66674600	Enhancers	H1 Cell Line	embryonic stem cell
15	chr11:66671600-66674600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:66671600-66674800	Enhancers	Esophagus	oesophagus
17	chr11:66671600-66676000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:66671800-66674400	Flanking Active TSS	HMEC	breast
19	chr11:66672200-66674400	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr11:66672200-66674400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:66672200-66674400	Enhancers	Brain Anterior Caudate	brain
22	chr11:66672200-66674600	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr11:66672200-66674800	Enhancers	Brain Hippocampus Middle	brain
24	chr11:66672200-66675400	Weak transcription	Fetal Intestine Small	intestine
25	chr11:66672200-66675800	Flanking Active TSS	Liver	Liver
26	chr11:66672200-66676000	Enhancers	Brain Cingulate Gyrus	brain
27	chr11:66672200-66684000	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr11:66672400-66674200	Transcr. at gene 5' and 3'	Hela-S3	cervix
29	chr11:66672600-66675400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr11:66672600-66675400	Enhancers	Gastric	stomach
31	chr11:66672600-66675600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr11:66672600-66677200	Enhancers	Brain Substantia Nigra	brain
33	chr11:66672600-66680000	Weak transcription	HUVEC	blood vessel
34	chr11:66672600-66683000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr11:66672800-66674000	Weak transcription	Pancreas	Pancrea
36	chr11:66672800-66674600	Enhancers	Brain Angular Gyrus	brain
37	chr11:66672800-66675600	Enhancers	A549	lung
38	chr11:66672800-66676200	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr11:66673000-66674200	Enhancers	K562	blood
40	chr11:66673000-66674400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
41	chr11:66673000-66674400	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr11:66673000-66674600	Enhancers	Osteobl	bone
43	chr11:66673200-66674400	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr11:66673200-66674600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr11:66673200-66674600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
46	chr11:66673200-66674800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr11:66673200-66674800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr11:66673200-66676600	Enhancers	Placenta	Placenta
49	chr11:66673400-66674000	Weak transcription	Colonic Mucosa	Colon
50	chr11:66673400-66674200	Weak transcription	Psoas Muscle	Psoas

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