Variant report

Variant	rs36025924
Chromosome Location	chr2:171730143-171730144
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:171729910..171732029-chr2:171733045..171735260,2	MCF-7	breast:
2	chr2:171092223..171093153-chr2:171729363..171730378,4	K562	blood:
3	chr2:171727055..171729021-chr2:171729761..171731412,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508179	chr2:171708404-171736003	Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv431801	chr2:171721493-171966493	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv526140	chr2:171729643-171732497	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171729000-171730200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:171729200-171730200	Enhancers	HUVEC	blood vessel
3	chr2:171729200-171730600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr2:171729400-171730200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:171729400-171730200	Enhancers	Primary hematopoietic stem cells	blood
6	chr2:171729400-171730200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr2:171729400-171730200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr2:171729400-171730200	Enhancers	Fetal Heart	heart
9	chr2:171729400-171730200	Flanking Active TSS	Dnd41	blood
10	chr2:171729400-171730400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr2:171729400-171730400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr2:171729600-171730200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr2:171729600-171730200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr2:171729600-171730200	Enhancers	Primary B cells from peripheral blood	blood
15	chr2:171729600-171730200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
16	chr2:171729600-171730200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
17	chr2:171729600-171730200	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr2:171729600-171730200	Flanking Active TSS	Adipose Nuclei	Adipose
19	chr2:171729600-171730200	Flanking Active TSS	Brain Anterior Caudate	brain
20	chr2:171729600-171730200	Enhancers	Fetal Muscle Leg	muscle
21	chr2:171729600-171730200	Enhancers	Placenta	Placenta
22	chr2:171729600-171730200	Enhancers	Pancreas	Pancrea
23	chr2:171729600-171730200	Enhancers	Psoas Muscle	Psoas
24	chr2:171729600-171730200	Active TSS	Rectal Smooth Muscle	rectum
25	chr2:171729600-171730200	Enhancers	Right Atrium	heart
26	chr2:171729600-171730200	Flanking Active TSS	HepG2	liver
27	chr2:171729600-171730200	Enhancers	HSMM	muscle
28	chr2:171729600-171730200	Enhancers	NHDF-Ad	bronchial
29	chr2:171729600-171730400	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr2:171729600-171730400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr2:171729800-171730200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr2:171729800-171730200	Enhancers	Lung	lung
33	chr2:171729800-171730200	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr2:171729800-171730200	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr2:171729800-171730400	Enhancers	Spleen	Spleen
36	chr2:171730000-171730200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr2:171730000-171730200	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr2:171730000-171730200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr2:171730000-171730200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr2:171730000-171730200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr2:171730000-171730200	Enhancers	Primary T cells from cord blood	blood
42	chr2:171730000-171730200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
43	chr2:171730000-171730200	Flanking Bivalent TSS/Enh	Primary T helper memory cells from peripheral blood 1	blood
44	chr2:171730000-171730200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr2:171730000-171730200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
46	chr2:171730000-171730200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr2:171730000-171730200	Enhancers	Liver	Liver
48	chr2:171730000-171730200	Enhancers	Brain Cingulate Gyrus	brain
49	chr2:171730000-171730200	Enhancers	Brain Hippocampus Middle	brain
50	chr2:171730000-171730200	Enhancers	Brain Inferior Temporal Lobe	brain

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