Variant report

Variant	rs36027220
Chromosome Location	chr13:37583420-37583421
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:37582706..37585251-chr13:37601863..37604219,2	K562	blood:
2	chr13:37570200..37576399-chr13:37580273..37587423,15	MCF-7	breast:
3	chr13:37565187..37567095-chr13:37582150..37584069,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000120699	Chromatin interaction
ENSG00000120697	Chromatin interaction
ENSG00000102710	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs41292229	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv522336	chr13:37305641-37584838	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37575400-37583800	Weak transcription	Spleen	Spleen
2	chr13:37575400-37631200	Weak transcription	Stomach Mucosa	stomach
3	chr13:37575600-37583800	Weak transcription	Esophagus	oesophagus
4	chr13:37575600-37583800	Weak transcription	Gastric	stomach
5	chr13:37575600-37592800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:37576000-37583800	Weak transcription	Pancreas	Pancrea
7	chr13:37576000-37592600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr13:37576200-37606200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr13:37576200-37623800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr13:37576400-37583800	Weak transcription	Fetal Heart	heart
11	chr13:37576400-37588600	Weak transcription	Hela-S3	cervix
12	chr13:37576400-37595400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr13:37576400-37607600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr13:37576400-37608600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr13:37576400-37618800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr13:37576400-37623800	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr13:37576600-37586800	Strong transcription	HSMM	muscle
18	chr13:37576600-37587400	Strong transcription	Placenta	Placenta
19	chr13:37576600-37600400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr13:37576600-37608400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr13:37576600-37623000	Strong transcription	Liver	Liver
22	chr13:37576600-37625800	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr13:37576800-37584400	Strong transcription	NHEK	skin
24	chr13:37576800-37586200	Strong transcription	H1 Cell Line	embryonic stem cell
25	chr13:37576800-37588400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr13:37576800-37600600	Strong transcription	HUVEC	blood vessel
27	chr13:37576800-37603000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr13:37576800-37609000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr13:37576800-37621200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr13:37576800-37623200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr13:37577000-37584200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr13:37577000-37585000	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr13:37577000-37585400	Strong transcription	Fetal Lung	lung
34	chr13:37577000-37585400	Strong transcription	Rectal Mucosa Donor 31	rectum
35	chr13:37577000-37586400	Strong transcription	Primary B cells from cord blood	blood
36	chr13:37577000-37586400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr13:37577000-37586400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr13:37577000-37586400	Strong transcription	Stomach Smooth Muscle	stomach
39	chr13:37577000-37587600	Strong transcription	HepG2	liver
40	chr13:37577000-37588200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr13:37577000-37588400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr13:37577000-37591600	Strong transcription	NH-A	brain
43	chr13:37577000-37608400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr13:37577000-37608600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr13:37577000-37623000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr13:37577000-37623400	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr13:37577000-37624400	Strong transcription	Primary T helper cells fromperipheralblood	blood
48	chr13:37577200-37585200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr13:37577200-37586400	Strong transcription	Brain Hippocampus Middle	brain
50	chr13:37577200-37591600	Strong transcription	HMEC	breast

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