Variant report

Variant	rs360273
Chromosome Location	chr2:127069866-127069867
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GYPC-2	chr2:127069791-127071117	NONHSAT074129

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10928762	0.93[ASN][1000 genomes]
rs11896176	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12623955	0.87[ASN][1000 genomes]
rs12623981	0.87[ASN][1000 genomes]
rs12623997	0.86[ASN][1000 genomes]
rs168603	0.87[ASN][1000 genomes]
rs168604	0.88[ASN][1000 genomes]
rs17013551	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17013571	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17013747	0.87[ASN][1000 genomes]
rs17013748	0.87[ASN][1000 genomes]
rs17013750	0.87[ASN][1000 genomes]
rs17013752	0.87[ASN][1000 genomes]
rs17013753	0.87[ASN][1000 genomes]
rs17013755	0.87[ASN][1000 genomes]
rs17013756	0.87[ASN][1000 genomes]
rs187215	0.86[ASN][1000 genomes]
rs1905386	0.89[ASN][1000 genomes]
rs191698	0.86[ASN][1000 genomes]
rs2896782	0.86[ASN][1000 genomes]
rs359682	0.92[ASN][1000 genomes]
rs359683	0.93[ASN][1000 genomes]
rs359689	0.81[ASN][1000 genomes]
rs359690	0.86[ASN][1000 genomes]
rs359694	0.87[ASN][1000 genomes]
rs359695	0.86[ASN][1000 genomes]
rs359696	0.86[ASN][1000 genomes]
rs359697	0.87[ASN][1000 genomes]
rs359698	0.87[ASN][1000 genomes]
rs359699	0.89[ASN][1000 genomes]
rs359702	0.86[ASN][1000 genomes]
rs360231	0.93[ASN][1000 genomes]
rs360237	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs360259	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs360260	0.80[ASN][1000 genomes]
rs360261	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs360264	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs360265	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs360268	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs360269	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs360272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs360274	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs360275	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs360276	0.83[ASN][1000 genomes]
rs360280	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs360283	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs360289	0.97[ASN][1000 genomes]
rs360294	0.97[ASN][1000 genomes]
rs360315	0.97[ASN][1000 genomes]
rs360391	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs373314	0.86[ASN][1000 genomes]
rs4346328	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4513242	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4592797	0.97[ASN][1000 genomes]
rs49346	0.86[ASN][1000 genomes]
rs55656522	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55753332	0.86[ASN][1000 genomes]
rs56035712	0.84[ASN][1000 genomes]
rs56242352	0.87[ASN][1000 genomes]
rs56365289	0.80[EUR][1000 genomes]
rs59340001	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60155213	0.86[ASN][1000 genomes]
rs60323577	0.87[ASN][1000 genomes]
rs60389409	0.87[ASN][1000 genomes]
rs66914537	0.93[ASN][1000 genomes]
rs6756754	0.93[ASN][1000 genomes]
rs6757298	0.87[ASN][1000 genomes]
rs68160725	0.93[ASN][1000 genomes]
rs72965980	0.87[ASN][1000 genomes]
rs72965981	0.87[ASN][1000 genomes]
rs72965983	0.87[ASN][1000 genomes]
rs72965984	0.87[ASN][1000 genomes]
rs72965987	0.87[ASN][1000 genomes]
rs72965992	0.87[ASN][1000 genomes]
rs72965993	0.87[ASN][1000 genomes]
rs72967704	0.86[ASN][1000 genomes]
rs72967706	0.86[ASN][1000 genomes]
rs73953860	0.87[ASN][1000 genomes]
rs73953865	0.87[ASN][1000 genomes]
rs7568138	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7595600	0.87[ASN][1000 genomes]
rs7595619	0.87[ASN][1000 genomes]
rs7600474	0.86[ASN][1000 genomes]
rs7604200	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013181	chr2:126451639-127246965	Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv997962	chr2:126464195-127234384	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1001995	chr2:126506739-127314488	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv534297	chr2:126506966-127245682	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1013215	chr2:126857279-127127152	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv535918	chr2:126857279-127127152	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv874998	chr2:126917647-127175585	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv583010	chr2:126962441-127079722	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1002265	chr2:127029745-127733458	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv535919	chr2:127029745-127733458	Strong transcription Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	esv2757831	chr2:127033017-127161094	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	esv2759089	chr2:127033017-127161094	Weak transcription Bivalent Enhancer Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv874999	chr2:127068140-127218915	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:127064600-127070400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr2:127066200-127070600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:127069600-127070600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr2:127069600-127070800	Enhancers	H9 Cell Line	embryonic stem cell
5	chr2:127069600-127070800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr2:127069800-127070600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr2:127069800-127070600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr2:127069800-127070800	Enhancers	H1 Cell Line	embryonic stem cell

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